Locus 2012

Sequence ID 2R_DroMel_CAF1
Location 7,567,755 – 7,567,864
Length 109
Max. P 0.884326
window3329

overview

Window 9

Location 7,567,755 – 7,567,864
Length 109
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 75.77
Mean single sequence MFE -27.44
Consensus MFE -6.82
Energy contribution -9.44
Covariance contribution 2.62
Combinations/Pair 1.08
Mean z-score -1.97
Structure conservation index 0.25
SVM decision value 0.93
SVM RNA-class probability 0.884326
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7567755 109 - 20766785
UUUGCAAAAUAAAGUGGUGA---------UACCUGACUUGAUUUCCACCGAAAUUAAUCCACUGUCGAGUGUUUCGGAUCGCUACAAAAGAGCAUAGAGCUCAAGUUGAAUUAGCAAG
.((((........(((((((---------(.((.((.((((((((....))))))))))((((....))))....))))))))))....((((.....))))...........)))). ( -30.00)
>DroSec_CAF1 14051 100 - 1
UUUGCGAAAUAAAGUGGUGA---------UACCCGACUUGAUUUCCACCGAAAUUAAUCCACUGUC---------GGAUCGCCACAAAAGAGCAUAGAGCUCAAGUUGGAUUAGCAAG
.((((........(((((((---------(..(((((((((((((....))))))))......)))---------))))))))))....((((.....))))...........)))). ( -32.70)
>DroSim_CAF1 14347 109 - 1
UUUGCGAAAUAAAGUGGUGA---------UACCCGACUUGAUUUCCACCGAAAUUAAUCCACUGUCGAGUGUUUUGGAUCGCCACAAAAGAGCAUAGAGCUCAAGUUGGAUUAGCAAG
.((((........(((((((---------(.((.((.((((((((....))))))))))((((....))))....))))))))))....((((.....))))...........)))). ( -31.90)
>DroEre_CAF1 13945 100 - 1
-UUGCGAAAGAAUGUGCUGACU----------CUGACUCGAAUUCCACCAAAAUUAAUC-------GAGUGUUUCGUAUGGCCACAAAUGCCCAUACAGCUCAAGUUGCAUUUUGAAG
-.(((((.....((.(((....----------...((((((................))-------)))).....((((((.((....)).))))))))).))..)))))........ ( -21.89)
>DroYak_CAF1 14378 113 - 1
-UGGCGAAAUAAAGUGAUGCAUAAACUGAUAACUGACUUGAUUUCCUCCGAAAUUAAUCCAAUGCCGAGUGAGUCCCAUGGCCACAAAAGCCCAUAGAGCUCAAA----AUUAUCAAA
-.((((......(((....((.....))...)))((.((((((((....))))))))))...))))...((((..(.((((.(......).)))).)..))))..----......... ( -20.70)
>consensus
UUUGCGAAAUAAAGUGGUGA_________UACCUGACUUGAUUUCCACCGAAAUUAAUCCACUGUCGAGUGUUUCGGAUCGCCACAAAAGAGCAUAGAGCUCAAGUUGGAUUAGCAAG
.............(((((((..............((.((((((((....))))))))))......(((.....)))..)))))))....((((.....))))................ ( -6.82 =  -9.44 +   2.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:50 2006