Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,550,004 – 7,550,094 |
Length | 90 |
Max. P | 0.783162 |
Location | 7,550,004 – 7,550,094 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -27.83 |
Energy contribution | -27.95 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.91 |
Structure conservation index | 0.82 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783162 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7550004 90 - 20766785 UCCUGCUGGCGAUGCGUGACGUCACAGCCGACUUCGGCUGGUUCCACCUGCAUUUCGUGGUUUUGCCGGCGUAAGCUUUGUUUGGAAUUA (((....(((((.((...(((((..(((((....)))))(((.((((.........))))....))))))))..)).))))).))).... ( -31.80) >DroSec_CAF1 8280 90 - 1 UCCUGCUGGCGAUGCGUGACGUCACAGCCGACGUCGGCUGGUUCCACCUGCAUUUCGCGGUUUGGCCGGCGUAAGCUUUGUUUGGAAUUG (((.((.(((..(((.(((((((......)))))))(((((((..(((.((.....)))))..)))))))))).)))..))..))).... ( -34.50) >DroSim_CAF1 8541 90 - 1 UCCUGCUGGCGAUGCGUGACGUCACAGCCGACGUCGGCUGGUUCCACCUGCAUUUCGCAGUUUUGCCGGCGUAAGCUUUGUUUGGAAUUG (((.((.(((..(((.(((((((......)))))))((((((.....((((.....))))....))))))))).)))..))..))).... ( -33.70) >DroYak_CAF1 8294 90 - 1 UCAUGCUGGCGAAGCGUGACGUCACAGCCGACGUCGGUUGGUUCAACCUGCAUUUUGAUGUUUUGCCGGCGCAAGCUUUGUUUGGAACUG ....(((((((((((((((((((......))))))(((((...))))).........))))))))))))).(((((...)))))...... ( -36.40) >consensus UCCUGCUGGCGAUGCGUGACGUCACAGCCGACGUCGGCUGGUUCCACCUGCAUUUCGCGGUUUUGCCGGCGUAAGCUUUGUUUGGAAUUG ....((((((((.((.(((((((......)))))))((.((.....)).))........)).)))))))).(((((...)))))...... (-27.83 = -27.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:37 2006