Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,537,269 – 7,537,359 |
Length | 90 |
Max. P | 0.566386 |
Location | 7,537,269 – 7,537,359 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 93.38 |
Mean single sequence MFE | -24.53 |
Consensus MFE | -21.07 |
Energy contribution | -20.97 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -1.91 |
Structure conservation index | 0.86 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7537269 90 + 20766785 AAUGUAGGGCUUAUGUUUUAUUAUAGGCCUUGUUUUGAAUUUGGUUCCUUUUCGCCU-UCGCCUCCCUUGAUUUUGGGGUGCAAAGCGAUC ....(((((((((((......)))))))))))...................((((.(-(.((.((((........)))).)).)))))).. ( -25.90) >DroSec_CAF1 18781 89 + 1 AAUGUAGGGCUUAUGUUUUAUUAUAGGCCUUGUUUCGAAUUUGGUUCCCUUUCGCCU-UCGCCUCGCUGGAUUUUGGGGUGCAA-ACGAUC ....(((((((((((......)))))))))))..(((..((((..((((.....((.-.((...))..)).....))))..)))-)))).. ( -23.60) >DroSim_CAF1 19202 91 + 1 AAUGUAGGGCUUAUGUUUUAUUAUAGGCCUUGUUUCGAAUUUGGUUCCCCUUCGCCUUUCGCCUUCCUGGAUUUUGGGGUGCAAAACGAUC ....(((((((((((......)))))))))))..(((..((((...((((....((............)).....))))..)))).))).. ( -24.10) >consensus AAUGUAGGGCUUAUGUUUUAUUAUAGGCCUUGUUUCGAAUUUGGUUCCCUUUCGCCU_UCGCCUCCCUGGAUUUUGGGGUGCAAAACGAUC ....(((((((((((......)))))))))))..(((.....(((........)))....((.((((........)))).))....))).. (-21.07 = -20.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:26 2006