Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,531,103 – 7,531,198 |
Length | 95 |
Max. P | 0.823557 |
Location | 7,531,103 – 7,531,198 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 77.82 |
Mean single sequence MFE | -23.81 |
Consensus MFE | -15.27 |
Energy contribution | -15.00 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.35 |
Mean z-score | -1.64 |
Structure conservation index | 0.64 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7531103 95 + 20766785 ---AGGAACAU-----GAACAAGAACUACAAAACGGCAACCAUUAUAUUUGGCCACUAAUUGGAGCAAUUUGAGACAACACCUCAGAUUGUGGGUCCCGGGCG ---........-----.................(((..(((...........(((.....))).((((((((((.......)))))))))).))).))).... ( -19.60) >DroPse_CAF1 19509 83 + 1 --------------------GAGAACUACAAAACGGCAACCAUUAUAUUUGGCCACUAAUUGGAGCAAUUUGAGGCAACACCUCAGAUUGUGGGGGCCACGAA --------------------..............(((..((...........(((.....))).(((((((((((.....)))))))))))))..)))..... ( -26.40) >DroEre_CAF1 12829 103 + 1 AACCAGAACAAGAAGAGAACAAGAGCUACAAAACGGCCACCAUUAUAUUUGGCCACUAAUUGGAGCAAUUUGAGACAACACCUCAGAUUGCGGGGCUCGGGCG ......................((((..(.....(((((..........)))))..........((((((((((.......)))))))))))..))))..... ( -30.10) >DroWil_CAF1 15552 86 + 1 -----------------GCCAAAAACUACAAAACGUCCAACAUUAUAUUUGGCCACUAAUUGGAGCAAUUUGAGACAACACCUUGGGAGAUGAGAUGCAGGGG -----------------((((((........................))))))......(..((....))..).......(((((.(........).))))). ( -11.16) >DroYak_CAF1 13012 98 + 1 AACAAGAACCC-----GAACAAGAAGUACAAAACGGCCACCAUUAUAUUUGGCCACUAAUUGGAGCAAUUUGAGACAACACCUCAGAUUGUGGGGCCCGGGCG ........(((-----(........((.....))((((.((...........(((.....))).((((((((((.......)))))))))))))))))))).. ( -29.20) >DroPer_CAF1 13478 83 + 1 --------------------GAGAACUACAAAACGGCAACCAUUAUAUUUGGCCACUAAUUGGAGCAAUUUGAGGCAACACCUCAGAUUGUGGGGGCCACGAG --------------------..............(((..((...........(((.....))).(((((((((((.....)))))))))))))..)))..... ( -26.40) >consensus _________________AACAAGAACUACAAAACGGCAACCAUUAUAUUUGGCCACUAAUUGGAGCAAUUUGAGACAACACCUCAGAUUGUGGGGCCCAGGCG ..................................((...((...........(((.....))).((((((((((.......))))))))))))...))..... (-15.27 = -15.00 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:25 2006