Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,462,800 – 1,462,960 |
Length | 160 |
Max. P | 0.973728 |
Location | 1,462,800 – 1,462,920 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.33 |
Mean single sequence MFE | -32.76 |
Consensus MFE | -27.88 |
Energy contribution | -27.16 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.19 |
Mean z-score | -1.27 |
Structure conservation index | 0.85 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1462800 120 + 20766785 AAUGGGGACAACGACUUCAUCCGCAGGAACGGGAACAAAUGGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUCAGUGCUCUUCGGUGCAUAAAGCGAUGCGGCUUGACAAAU ..((....))......(((.(((((......(((((((...((......)).....)))))))..(((((((..((((....)))).)))))))((.....))..)))))..)))..... ( -34.40) >DroSec_CAF1 83319 120 + 1 AAUGGGGACAAAGACUUCAUCCGCAGGAACGGGAACAAAUGGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUUAGUGUUCUUCGGUGCAUAAAGCGAUGCGGCUUGACAAAU ..((....))......(((.(((((......(((((((...((......)).....)))))))..(((((((..((((....)))).)))))))((.....))..)))))..)))..... ( -32.70) >DroSim_CAF1 82798 120 + 1 AAUGGGGACAACGACUUCAUCCGCAGGAACGGGAACAAAUGGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUUAGUGCUCUUCGGUGCAUAAAGCGAUGCGGCUUGACAAAU ..((....))......(((.(((((......(((((((...((......)).....)))))))..(((((((..((((....)))).)))))))((.....))..)))))..)))..... ( -34.40) >DroEre_CAF1 94311 120 + 1 AAUGGGGACAACGGCUUCAUCCACAGGAACAGGAACAAAUGGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUCAGUGCUCUUUGGUGCACAAAGCGAUGCGGCUUGACAAAU ..((....)).((((((..(((...)))...(((((((...((......)).....)))))))))))))(((((((((((..((((.(....).)))).)))...))))))))....... ( -31.20) >DroYak_CAF1 89385 120 + 1 AAUAGGGACAACGACUUCAUCCACAGGAACAGGAACAAAUGGUUAAAGUACAAAAGUUGUCCUGAGCUGAAAUUGCACUUCAGUGCUCUUUGGCGCAUAAAGCGAUGCGGCUUGACAAAU ....((((((((.((((...(((...(........)...)))...))))......))))))))((((((..(((((......(((((....))))).....))))).))))))....... ( -31.10) >consensus AAUGGGGACAACGACUUCAUCCGCAGGAACGGGAACAAAUGGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUCAGUGCUCUUCGGUGCAUAAAGCGAUGCGGCUUGACAAAU ....((((((((.((((...(((...(........)...)))...))))......))))))))(.(((((((..((((....)))).))))))).)...((((......))))....... (-27.88 = -27.16 + -0.72)
Location | 1,462,840 – 1,462,960 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -32.21 |
Consensus MFE | -26.92 |
Energy contribution | -28.52 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.11 |
Mean z-score | -1.99 |
Structure conservation index | 0.84 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1462840 120 + 20766785 GGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUCAGUGCUCUUCGGUGCAUAAAGCGAUGCGGCUUGACAAAUUAGCGUCUUAAUAAGGAGAUGCUAGAACAUACAUAUAUUU .(((...((....(((((((((...(((((((..((((....)))).)))))))((.....)))).))))))).))...((((((((((......)))))))))))))............ ( -35.70) >DroSec_CAF1 83359 120 + 1 GGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUUAGUGUUCUUCGGUGCAUAAAGCGAUGCGGCUUGACAAAUUAGCGUCUUAAUAAAGAGAUGCUAGAACAUGCAUCUAUUU ((((..((.(((.....))).)).))))((((..((((....)))).))))(((((((.((((......))))......((((((((((......))))))))))...)))))))..... ( -34.00) >DroSim_CAF1 82838 120 + 1 GGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUUAGUGCUCUUCGGUGCAUAAAGCGAUGCGGCUUGACAAAUUAGCGUCUUAAUAAGGAGAUGCUAGAACAUGCAUAUAUUU .(((...((....(((((((((...(((((((..((((....)))).)))))))((.....)))).))))))).))...((((((((((......)))))))))))))............ ( -35.70) >DroEre_CAF1 94351 120 + 1 GGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUCAGUGCUCUUUGGUGCACAAAGCGAUGCGGCUUGACAAAUUAGCGUCUUAAUAAGGAGAUGCUAGAGCAUACAUUUAUUU .(((((.((......((((((.((.((..(((..((((....)))).)))..))...)).))))))...)))))))...((((((((((......))))))))))............... ( -33.50) >DroYak_CAF1 89425 107 + 1 GGUUAAAGUACAAAAGUUGUCCUGAGCUGAAAUUGCACUUCAGUGCUCUUUGGCGCAUAAAGCGAUGCGGCUUGACAAAUUAGCGUCGUAAUAAA-------------AUACAUAUAUUU .......(((............((.((..((...((((....))))..))..)).))....(((((((..............)))))))......-------------.)))........ ( -22.14) >consensus GGUUAAAGUACAAAAGUUGUUCUGAGCUGAAGUUGCACUUCAGUGCUCUUCGGUGCAUAAAGCGAUGCGGCUUGACAAAUUAGCGUCUUAAUAAGGAGAUGCUAGAACAUACAUAUAUUU .......(((...(((((((((...(((((((..((((....)))).)))))))((.....)))).)))))))......((((((((((......))))))))))....)))........ (-26.92 = -28.52 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:19 2006