| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 691,979 – 692,070 |
| Length | 91 |
| Max. P | 0.933739 |
| Location | 691,979 – 692,070 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.41 |
| Mean single sequence MFE | -22.32 |
| Consensus MFE | -13.14 |
| Energy contribution | -13.83 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 691979 91 + 20766785 UUCAUUAAUUUCAUUUUUUCCAGAUGUUGAGGGCAUUUGCAGGUAGCAUUUUACUUGCUGCCGAAUUUUCUGCAAAU------UUAAGAAAUUAUUA--------------- .....(((((((........(((((((.....)))))))..(((((((.......)))))))...............------....)))))))...--------------- ( -22.00) >DroSec_CAF1 22135 91 + 1 UUCAUUAAUUUCAUUUUUUCCAGAUGUUGAUGGCAUUUGCAGGUAGCAUUUAACUUGCUGCCGAAUUUUCUGCAAAU------UUAAGAAAUUAUUA--------------- .....(((((((.......(((........))).((((((((((((((.......)))))))((....)))))))))------....)))))))...--------------- ( -22.80) >DroEre_CAF1 57331 106 + 1 UUCAUUAAUUUCAUUUUUUCCAGAUGUUGAGGGCAUUUGCAGGUAGCAUUUUACUUGUUGCCGAAUUUUCUGCAAAU------UUAAGGAAAUAGAAAUCCAAUUAGUUAGA ...(((((((..(((((((((((((((.....))))))((((((((((.......)))))))((....)))))....------....))))...)))))..))))))).... ( -21.00) >DroYak_CAF1 3438 106 + 1 UUCAUUAAUUUCAUUUUUUCCAGAUGUUGAGGGCAUUUGCAGGUAGCAUUUUACCUGUUGCCGAAUUUUCUGCAAAU------UUGAGAAAAGAGUAAUCCUAUUAGUAAGG ...((((((....((((((((((((.(((..((((...((((((((....))))))))))))((....))..)))))------))).)))))))........)))))).... ( -23.50) >DroMoj_CAF1 2228 100 + 1 UUCAUUUAUUUCAUUGCGUCCUGAUGUUGAGGGCAUUUGCAAAUAACAUUUUACUUGCUGGCGUAUUUUCUGCAAGA-A-U--AUAUGAAAAUAUUAUA----UUA----AU (((((.(((((..(((((((((.......)))))....((((.(((....))).)))).............))))))-)-)--).))))).........----...----.. ( -18.50) >DroAna_CAF1 305734 104 + 1 UUCAUUUAUCUCGUUUCUUCCAGAUGUCGACGGCAUUUGGAGAUAGCAUUUUACUUGUUGCCGAAUUUUCUACAAAACAUUGGUUACGAAAAAUG--------UUAUUUAGA ..................(((((((((.....)))))))))(((((((((((..((((.(((((.((((....))))..))))).))))))))))--------))))).... ( -26.10) >consensus UUCAUUAAUUUCAUUUUUUCCAGAUGUUGAGGGCAUUUGCAGGUAGCAUUUUACUUGCUGCCGAAUUUUCUGCAAAU______UUAAGAAAAUAGUA______UUA____G_ ........((((........(((((((.....)))))))..(((((((.......))))))).........................))))..................... (-13.14 = -13.83 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:03 2006