Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,529,632 – 7,529,738 |
Length | 106 |
Max. P | 0.766378 |
Location | 7,529,632 – 7,529,738 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 76.07 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -19.64 |
Energy contribution | -20.87 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.32 |
Mean z-score | -1.30 |
Structure conservation index | 0.67 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7529632 106 + 20766785 AUGGGGACUGAAACUGGGAAUAUAACUACUCACAUAUCACGCUCAGUUUGGCGGGCGGAGACGCCUCCCUGGCGCCGCUGGCCAAAUUUGUCGCGAUGCAAACAUA ((.(.(((..((((((((.((((..........))))....))))))))(((.(((((...((((.....))))))))).)))......))).).))......... ( -34.90) >DroVir_CAF1 18306 88 + 1 -------------CGU-----UUGAGUACUUACAUAUCACGCUCAAUUUAGCUGGAGGCGAGGCCUGCCUGGCGCCGCUGUUAACGCUGGCUGCAAUGCACACAUA -------------...-----((((((.............))))))..((((..(.((((..(((.....)))..)))).......)..))))............. ( -21.12) >DroPse_CAF1 18053 93 + 1 ----GGAC----AAUG-----AGGACUACUCACAUAUCACGCUCAAUUUGGCCGGUGGCGAGGCCUCUCUGGCGCCGCUGGCCAAACUGGUGGCAAUGCACACAUA ----(..(----(.((-----((.....)))).......(((.((.(((((((((((((...(((.....)))))))))))))))).)))))....))..)..... ( -37.80) >DroWil_CAF1 13825 93 + 1 ----UUUC----AAUG-----UUGAUUACUCACAUAUCACACUCAAUUUGGCUGUUGGUGACGCCUCCCUGGCGCCGCUGGACAAACUCAUGGCAAUGCACACAUA ----....----.(((-----(((...............(((.((((......)))))))..(((.....)))((((.(((......)))))))....)).)))). ( -18.10) >DroAna_CAF1 29016 89 + 1 -----------------UCAAAUAACUACUCACAUAUCACACUCAAUUUGGCUGGGGGAGACGCCUCCCUGGCGCCGCUGGCCAAACUUGUGGCAAUGCAAACAUA -----------------......................(((....((((((..(.((...((((.....)))))).)..))))))...))).............. ( -25.50) >DroPer_CAF1 12033 93 + 1 ----GGAC----AAUG-----AGGACUACUCACAUAUCACGCUCAAUUUGGCCGGUGGCGAGGCCUCUCUGGCGCCGCUGGCCAAACUGGUGGCAAUGCACACAUA ----(..(----(.((-----((.....)))).......(((.((.(((((((((((((...(((.....)))))))))))))))).)))))....))..)..... ( -37.80) >consensus ____GGAC____AAUG_____AUGACUACUCACAUAUCACGCUCAAUUUGGCUGGUGGCGACGCCUCCCUGGCGCCGCUGGCCAAACUGGUGGCAAUGCACACAUA ................................(((....(((....(((((((((((((...(((.....))))))))))))))))...)))...)))........ (-19.64 = -20.87 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:23 2006