Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,523,402 – 7,523,495 |
Length | 93 |
Max. P | 0.556858 |
Location | 7,523,402 – 7,523,495 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 84.29 |
Mean single sequence MFE | -17.63 |
Consensus MFE | -13.12 |
Energy contribution | -13.82 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.16 |
Mean z-score | -1.83 |
Structure conservation index | 0.74 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7523402 93 + 20766785 AAUUGUCGGAUGCCGAGCGAUGCUGCUCCUUAAAGUUCUAAUUUGGUAUCCC-CCCAAAUAAUUUAUUCAAAUUGUUUUCCUACAUUCUCUAUU .......((((((((((((....)))))....((((....))))))))))).-...(((((((((....)))))))))................ ( -17.80) >DroSec_CAF1 5299 93 + 1 AAUUGUCGGAUGCCGAGCGAUGCUGCUCCUUAAAGUUCUAAUUUGGUAUCCC-CCCAAAUAAUUUAUUCAAAUUGUUUUCCUAGAUUUCCUAUA ....(((((((((((((((....)))))....((((....))))))))))).-...(((((((((....))))))))).....)))........ ( -18.70) >DroSim_CAF1 5283 93 + 1 AAUUGUCGGAUACCGAGCGAUGCUGCUCCUUAAAGUUCUAAUUUGGUAUCCC-CCCAAAUAAUUUAUUCAAAUUGUUUUCCUAGAUUCCCUAUA ....(((((((((((((((....)))))....((((....))))))))))).-...(((((((((....))))))))).....)))........ ( -18.70) >DroEre_CAF1 5344 93 + 1 AAUUGUCGGAUGCCGAGCGAUGCUGCUCCUUAAAGUUCUAAUUUGGUAUCCC-CCCAAAUAAUUUAUUCAAAUUGUUUUCCUAGAUUCUCUAUU ....(((((((((((((((....)))))....((((....))))))))))).-...(((((((((....))))))))).....)))........ ( -18.70) >DroYak_CAF1 5329 94 + 1 AAUUGUCGGAUGCCAAGCGAUGCUGCUCCUUAAAGUUCUAAUUUGGUAUCCCCCCCAAAUAAUUUAUUCAAAUUGUUUUCCUAGAUUCUCUAUU ....(((((((((((((....(((.........))).....)))))))))).....(((((((((....))))))))).....)))........ ( -17.80) >DroPer_CAF1 6467 78 + 1 AAUUGUCAAUCGCCGCGAGAUUGUUCGCCUUAAAGUUCUCAUUUGAGCU----CUUGGAUAAUUUAUUCAAAUGGUAUUUUU------------ ...........((((((((....))))).....(((((......)))))----.(((((((...)))))))..)))......------------ ( -14.10) >consensus AAUUGUCGGAUGCCGAGCGAUGCUGCUCCUUAAAGUUCUAAUUUGGUAUCCC_CCCAAAUAAUUUAUUCAAAUUGUUUUCCUAGAUUCUCUAUU .......((((((((((((....)))))....((((....))))))))))).....(((((((((....)))))))))................ (-13.12 = -13.82 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:19 2006