| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,518,740 – 7,518,848 |
| Length | 108 |
| Max. P | 0.802148 |
| Location | 7,518,740 – 7,518,848 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.97 |
| Mean single sequence MFE | -42.63 |
| Consensus MFE | -24.88 |
| Energy contribution | -24.53 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7518740 108 + 20766785 GAUAGGCGACGGCCAAAACCUGACUGGUGGUGAGUGGCGGCGGUGAGGAGCUGCC---CGCGGUGGCAGUGUUCACUUUUCCGGCGGUGGCCAGCAGGAACUGCUUGAGAU ..((((((..((......))...(((.((((.(.((.(((.((((((..((((((---......)))))).))))))...))).)).).)))).)))....)))))).... ( -42.80) >DroVir_CAF1 933 105 + 1 GGUAAGCUACAGCUAGCAUCUGGCUUGUGGUUAGUGGCGGUGGUGAGGAUGUG------GCUGUGGCCGUGUUAACUUUUCCGGCGGUGGCCAAUAAAAACUGUUUGAGGU ..(((((.((((((((...))))).)))(((((.((.(((.(((...((..((------((....))))..)).)))...))).)).)))))..........))))).... ( -34.70) >DroGri_CAF1 796 105 + 1 GAUAAGCGACGGCAAGCAUUUGACUGGUGGUCAGUGGUGGUGGAGAGGAUGUG------GCUGUGGCGGUGUUAACCUUGCCGGCGGUGGCCAAUAAAAAUUGCUUGAGAU ............((((((.((......((((((.((.(((..(.(..((..(.------((....)).)..))..).)..))).)).)))))).....)).)))))).... ( -34.00) >DroMoj_CAF1 1167 105 + 1 GAUAGGCCACAGCCAGCAGCUGGCUGGUGGUUAGUGGUGGUGGCGAGGAGGUG------GCGGUGGCUGUGUUAACCUUGCCAGCGGUGGCCAAUAAGAAUUGCUUGAGAU ....(((((((((((.(((....))).))))).....((.(((((((((.(..------((....))..).)...)))))))).))))))))..((((.....)))).... ( -43.60) >DroAna_CAF1 18938 111 + 1 GAUAGGCCACGGCCAGGACCUGGCUGGUAGUCAAUGGUGGGGGUGAGGACGUGGCUGCUGCCGAGGCUGUGUUUACUUUUCCGGCUGUGGCUAGCAGGAACUGUUUGAGAU ....((((((((((...(((((((.....))))..)))((..(.(..((((..(((........)))..))))..).)..))))))))))))(((((...)))))...... ( -43.40) >DroPer_CAF1 2836 105 + 1 GAUAGGCCACGGCCAGCACUUGGCUGGUGGUAAGGGCCGGCGGCGAGGAGGUG------GCCGUGGCUGUGUUCACCUUGCCGGCGGUGGCCAGCAGGAACUGCUUGAGGU ((..(((((((((((.(.(((.((((.((((....)))).)))).))).).))------)))))))))....))((((((..((((((..((....)).)))))))))))) ( -57.30) >consensus GAUAGGCCACGGCCAGCACCUGGCUGGUGGUCAGUGGCGGUGGUGAGGAGGUG______GCCGUGGCUGUGUUAACCUUGCCGGCGGUGGCCAACAAGAACUGCUUGAGAU ..(((((..(((((((...))))))).((((((.((.((((...((((...........((....))........)))))))).)).)))))).........))))).... (-24.88 = -24.53 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:16 2006