Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,514,910 – 7,515,023 |
Length | 113 |
Max. P | 0.572431 |
Location | 7,514,910 – 7,515,023 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -16.24 |
Energy contribution | -16.44 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.21 |
Mean z-score | -1.69 |
Structure conservation index | 0.67 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7514910 113 + 20766785 UUAUGUAAGACAUUCUUCAGCAUUUAAUUUGAAAUUUCUGC-UCUUUUUCGAUUUGUUUUCCCGCCAAAAAUAGCUUGAAAAAAGUUAGAGGCGCGUUUUGAAUGUGUCCUUUG ...((.(((.....)))))((((((((..((...(((((((-(.((((((((.(((((((.......))))))).)))))))))).))))))..))..))))))))........ ( -21.50) >DroSec_CAF1 10337 104 + 1 U---------CAUUUUUCAGCAUUUAAUUUGAAAUGUCAGC-UUUUUUUCGAUUUGUUUUCCAGCCAGAAAUAGCUUGAACAAAGUUGGCAGCACGUUUUGAAAUUGUCCUUUG .---------.........((((((((..((...(((((((-(((..(((((.(((((((.......))))))).))))).))))))))))...))..)))))..)))...... ( -20.20) >DroSim_CAF1 10068 113 + 1 UUAUAUAAGACAUUUUUCAGCAUUUAAUUUGAAAUGUCAGC-UUUUUUUCGCUUUCUUUUCCCGCCAGAAAUGGCUUGAAAAAAGUUGGCAGCACGUUUUGAAUUUGUCCUUUG ........((((...(((((.....(((.((...(((((((-(((((((..............((((....))))..)))))))))))))).)).))))))))..))))..... ( -26.69) >DroEre_CAF1 10895 114 + 1 GUAUGGCACACGUUCUUCAGCAUUUCAUUUGAAAUGUCAGCAUUUUUUUCAAAUUGUUUUCCCGCCAAAAAUAGCUUGAAAAAAGUUGACAGCACGUUUUGAACUUGUCCUUUG ....((.(((.((((...((((((((....)))))((((((..(((((((((.(((((((.......))))))).))))))))))))))).....)))..)))).))))).... ( -28.40) >DroYak_CAF1 10477 112 + 1 GUAUUGCUAAUA-UAUUCAGCAUUUAAUUUGAAAUGGCAGC-UUUUUUUCAAAUUGUUUUUCCGCCAAAAAUAGCUUGAAAAAAGUUGGCAACUCGUUUUAAACUUGUCCUUUG ....((((....-.....))))(((((..(((..((.((((-((((((.(((.((((((((.....)))))))).))))))))))))).))..)))..)))))........... ( -23.70) >consensus UUAUGGAAGACAUUCUUCAGCAUUUAAUUUGAAAUGUCAGC_UUUUUUUCGAUUUGUUUUCCCGCCAAAAAUAGCUUGAAAAAAGUUGGCAGCACGUUUUGAACUUGUCCUUUG ...................((((((((..((...(((((((..(((((((((.(((((((.......))))))).))))))))))))))))...))..)))))..)))...... (-16.24 = -16.44 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:12 2006