Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,500,829 – 7,500,929 |
Length | 100 |
Max. P | 0.561278 |
Location | 7,500,829 – 7,500,929 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.26 |
Mean single sequence MFE | -37.23 |
Consensus MFE | -20.91 |
Energy contribution | -22.90 |
Covariance contribution | 1.99 |
Combinations/Pair | 1.13 |
Mean z-score | -2.30 |
Structure conservation index | 0.56 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7500829 100 + 20766785 CGGACUUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUCACGGUGGAGGACUCCUUGGCCAACUG-UCCGUUUGCCUCGUGUCCAAUGGACAUCUU .(((.(((((((((((((.((((((......)))))).)).))))...))))))).)))..(((.(((..-...))).)))..((((((...))))))... ( -37.80) >DroSec_CAF1 13447 100 + 1 CGGACUUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUCACGGCUGAGGCCUCCUUGGCCAACUG-GCCGUUUGCCUCGUGGCCAAUGGACAUCUU .((.((((.((.((((((.((((((......)))))).)).)))).))..))))))((((((((((...(-((.....)))...))))))).)))...... ( -42.90) >DroSim_CAF1 13184 100 + 1 CGGACUUCUCCAUGAGGGAAUUGGCAGACUUUCCGAUGCCAUUCACGGCUGAGGCCUCCUUGGCCAACUG-GCCGUUGGCCUCGUGGCCAAUGGACAUCUU .(((..((((((.........))).)))...)))(((((((((...((((((((((....(((((....)-))))..))))))..))))))))).)))).. ( -42.90) >DroEre_CAF1 13293 100 + 1 CGGACCUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUUUCGGCGGAGGAUUCCUUGGCCAACUG-GCCGUUCGCCUCGUGGCCAAUGAACAUCUU .(((..(((((........((((((......))))))(((......))))))))..)))(((((((...(-((.....)))...))))))).......... ( -39.90) >DroYak_CAF1 12821 100 + 1 CGGACUUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUUUCGGCGGAGGACUCCUUGGCCAACUG-GCCAUUCACCUCGUGGCCAAUGGACAUCUU .(((.((((((........((((((......))))))(((......))))))))).))).((.(((..((-(((((.......))))))).))).)).... ( -38.90) >DroPer_CAF1 10239 85 + 1 CGGUCUUCUCCAUAAUGGACUGCGCCGGCUUUUCG------------GGGUCGGCUUCCUU----AACUGCGCCAUUCUCUUCAUUGCCAAAGGACAUUUU ((((((..........)))))).((((((((....------------)))))))).(((((----...((.((.((.......)).)))))))))...... ( -21.00) >consensus CGGACUUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUCACGGCGGAGGACUCCUUGGCCAACUG_GCCGUUCGCCUCGUGGCCAAUGGACAUCUU .(..(....((((((((..((((((......)))))).........(((.((((...)))).)))..............)))))))).....)..)..... (-20.91 = -22.90 + 1.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:11 2006