Locus 1989

Sequence ID 2R_DroMel_CAF1
Location 7,495,629 – 7,495,749
Length 120
Max. P 0.753183
window3286

overview

Window 6

Location 7,495,629 – 7,495,749
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -30.61
Consensus MFE -23.74
Energy contribution -24.02
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -1.84
Structure conservation index 0.78
SVM decision value 0.48
SVM RNA-class probability 0.753183
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7495629 120 - 20766785
GACACCUACAACAACUUGACCAUCAAGGCUGUGAUGGCGCUAAAGCAUAUCACCCAGAGUUGUCUAAACACUACAGCGUUCUACUUCAAGUGUGACGACGACACCUUCGUUAAUGUGCCU
..........(((.((((.....))))..)))...(((((...(((...((.....))((((((...(((((..((.......))...)))))...))))))......)))...))))). ( -26.20)
>DroSec_CAF1 8224 120 - 1
GAUACCUACAACAACUUGACCAUCAAGGCUGUAAUGGCGCUAAAGCACAUCACCCAGAGUUGUCUAAACACAACAGCGUUCUACUUCAAGUGCGACGACGACACCUUCGUCAAUGUGCCC
..........(((.((((.....))))..)))...(((((....((((.((.....))(((((......)))))...............))))(((((.(....).)))))...))))). ( -29.00)
>DroSim_CAF1 7961 120 - 1
GACACCUACAACAACUUGACCAUCAAGGCUGUGAUGGCGCUAAAGCACAUCACCCAGAGUUGUCUAAACACAACAGCGUUCUACUUCAAGUGCGACGACGACACCUUCGUCAAUGUGCCU
......((((...((((((.....((.(((((((((((......)).)))))).....(((((......)))))))).)).....))))))..(((((.(....).)))))..))))... ( -31.60)
>DroEre_CAF1 8017 120 - 1
GACACCUACAACAACUUGACCAUCAAGGCUGUGAUGGCGCUAAAACACAUCAGCCAGAGUUGUGUAAACACCACCGCCUUCUACUUCAAGUGCGACGACGACACUUUCGUUAAUGUACCC
......((((...((((((.....(((((.(((.((((..............)))).....(((....)))))).))))).....)))))).....(((((.....)))))..))))... ( -27.94)
>DroYak_CAF1 7469 120 - 1
GACACCUACAACAACUUGACCAUCAAGGCUGUGAUGGCGCUCAAGCACAUCAGCCAGAGUUGUGUAAACACAACAGCCUUCUACUUCAAGUGCGACGACGACACAUUCGUCAACGUGCCC
.............((((((.....((((((.(((((((......)).)))))......((((((....)))))))))))).....))))))(((..(((((.....)))))..))).... ( -38.30)
>consensus
GACACCUACAACAACUUGACCAUCAAGGCUGUGAUGGCGCUAAAGCACAUCACCCAGAGUUGUCUAAACACAACAGCGUUCUACUUCAAGUGCGACGACGACACCUUCGUCAAUGUGCCC
..........(((.((((.....))))..)))...(((((....((((.((.....))(((((......)))))...............))))...(((((.....)))))...))))). (-23.74 = -24.02 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:09 2006