| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,494,187 – 7,494,307 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 7,494,187 – 7,494,307 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.41 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -25.67 |
| Energy contribution | -26.00 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7494187 120 + 20766785 GGCACAUUUACAAAGGUGUCGUCAUCACACUUGAGGAAGAAGGCGGCCCUGUCUGCGCAACUCUGGCUGAUGUGCUUCAGGGCCAUCACCGACUUCAGGGUCAGGUUGUGGUAACUGUCU (((((..........)))))((.(((((((((((.((((..((.(((((((...(((((.(.......).)))))..)))))))....))..))))....))))).)))))).))..... ( -45.50) >DroSec_CAF1 7271 91 + 1 ---------UCAAAGGUGUCAUCAUCACACUUGAGAAAGAAGGCGG--------------------CUGAUGUGUUUCAGGGCCAUCACCGACUUAAGGGUCAGGUUGUGGUAAAUGUCU ---------((..((((((.......))))))..))....(((((.--------------------((((......)))).(((((.(((((((....)))).))).)))))...))))) ( -26.20) >DroSim_CAF1 6957 100 + 1 GGCACAUUUACAAAGGUGUCAUCAUCACACUUGAGAAAGAAGGCGG--------------------CUGAUGUGUUUCAGGGCCAUCACCGACUUAAGGGUCAGGUUGUGGUAACUGUCU (((((..........)))))...(((((((((((.....(((.(((--------------------.(((((.(((....))))))))))).))).....))))).))))))........ ( -29.40) >consensus GGCACAUUUACAAAGGUGUCAUCAUCACACUUGAGAAAGAAGGCGG____________________CUGAUGUGUUUCAGGGCCAUCACCGACUUAAGGGUCAGGUUGUGGUAACUGUCU ..........(..((((((.......))))))..).....((((((....................((((......)))).(((((.(((((((....)))).))).)))))..)))))) (-25.67 = -26.00 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:08 2006