Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,476,634 – 7,476,729 |
Length | 95 |
Max. P | 0.679201 |
Location | 7,476,634 – 7,476,729 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 86.36 |
Mean single sequence MFE | -26.44 |
Consensus MFE | -20.29 |
Energy contribution | -21.82 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.05 |
Mean z-score | -2.53 |
Structure conservation index | 0.77 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679201 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7476634 95 + 20766785 UCUGCGGCUUCCUCUUGCCGCUUCUUGUUAGCAUUUCUGCCGACAUUUUCGGCGACCUUAGCGCCGAAGGAAAAACCAAAG--AAAAAAU--CAUCGAA ...(((((........)))))(((((((..(((....)))..)).(((((((((.......)))))))))........)))--)).....--....... ( -29.60) >DroGri_CAF1 95142 88 + 1 UUUGCGGCUUCCUC-UGCAGCUUCUUGUUAGCAUUUUAGCCGACAUUUGAUUCGACCUUAA-GCUGA----AAAAUCAAAA---CAACAA--CAGCCAA ..(((((((.....-((((((.....))).)))....))))).))................-((((.----..........---......--))))... ( -15.53) >DroSec_CAF1 93060 95 + 1 UCUGCGGCUUCCUCUUGCCGCUUCUUGUUAGCAUUUCUGCCGACAUUUUCGGCGACCUUAGCGCCGAAGGAAAAACCCAAG--AAAAAAU--CAUCGAA ...(((((........)))))(((((((..(((....)))..)).(((((((((.......)))))))))........)))--)).....--....... ( -29.60) >DroEre_CAF1 92691 97 + 1 UCUGCGGCUUCCUCUUGCCGCUUCUUGUUAGCAUUUCUGCCGACAUUUUCGGCGACCUUAGCGCCGAAGGAAAAACAAAAAAAAAAAAAU--CAUCGAA ...(((((........)))))....(((..(((....)))..)))(((((((((.......)))))))))....................--....... ( -27.70) >DroYak_CAF1 91357 93 + 1 UCUGCGGCUUCCUCUUGCCGCUUCUUGUUAGCAUUUCUGCCGACAUUUUCGGCGACCUUAGCGCCGAAGGAAAACCAAAA----AAAAAU--CAUCGAA ...(((((........)))))....(((..(((....)))..)))(((((((((.......)))))))))..........----......--....... ( -27.70) >DroAna_CAF1 89452 99 + 1 UCUGUGGCUUCCUCUUGCCGCUUCUUGUUAGCAUUUCUGCCGACAUUUUCGGCGACCUUAGCGGCGAAGGAAAAACUAAAAUCAAAACAGCACAGCGAA .(((((.((((((.((((((((...((....))....((((((.....)))))).....)))))))))))).................))))))).... ( -28.52) >consensus UCUGCGGCUUCCUCUUGCCGCUUCUUGUUAGCAUUUCUGCCGACAUUUUCGGCGACCUUAGCGCCGAAGGAAAAACCAAAA__AAAAAAU__CAUCGAA ...(((((........)))))....(((..((......))..)))(((((((((.......)))))))))............................. (-20.29 = -21.82 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:58 2006