Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,460,691 – 1,460,811 |
Length | 120 |
Max. P | 0.997058 |
Location | 1,460,691 – 1,460,811 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.89 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -26.58 |
Energy contribution | -27.90 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.09 |
Mean z-score | -2.23 |
Structure conservation index | 0.87 |
SVM decision value | 2.79 |
SVM RNA-class probability | 0.997058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1460691 120 + 20766785 UAACUAAUUAAUUCUCAUGCGGCGUACUUUGUGGUGGACAGUCACCAGUCUACCAUGUUUCAUUUAAUUACGGAACAAUCUGCCAAAUAGUUGCAAAAUGAGAAUAUUUGGUCGGCAAAC ..(((((...(((((((((((((.......(((((((((........)))))))))(((((..........))))).............))))))...)))))))..)))))........ ( -32.70) >DroSec_CAF1 80802 117 + 1 UAACUAAUUAAUUCUCAUGCGGCGUACUUUGUGGUGGACAGUC---AGUCUACCAUGUUUCAUUUAAUUACGGAACAAUCUGCCAAACAGUUGCAAAAUGAGAAUAGUUGGUCGGCAAAC ..((((((((.((((((((((((.......(((((((((....---.)))))))))(((((..........))))).............))))))...))))))))))))))........ ( -35.20) >DroSim_CAF1 79980 117 + 1 UAACUAAUUAAUUCUCAUGCGGCGUACUUUGUGGUGGACAGUC---AGUCUACCAUGUUUCAUUUAAUUACGGAACAAUCUGCCAAAUAGUUGCAAAAUGCGAAUAGUUGGUCGGCAAAC ..((((((((.(((.((((((((.......(((((((((....---.)))))))))(((((..........))))).............))))))...)).)))))))))))........ ( -30.70) >DroEre_CAF1 91868 117 + 1 UAACUAAUUAAUUCGCAUGCGGUGUACUUUGUGGUGGACAGUC---AGUCUACCAUGUUUCAUUUAAUUACGAAACAAUCUGCCAAAUAGUUGCAAAAUGAGAAUAGUUGGUCGGCAAAC ..((((((((.(((.(((....((((((..(((((((((....---.)))))))))(((((..........)))))............)).))))..))).)))))))))))........ ( -28.50) >DroYak_CAF1 83858 115 + 1 UAAAUAAUUAAUUCUCAUGCACCGUACUUU-UGGAGGACUGUC---AGUCUACCAUGAUUCAUUUAAUUACUGAACAACCUGC-AAAUAGUUGCAAAAUGAGAACAGUUGGUCGGCCAAC ...........((((((((((....(((((-((.(((....((---(((.....(((...)))......)))))....))).)-))).)))))))...))))))..(((((....))))) ( -25.90) >consensus UAACUAAUUAAUUCUCAUGCGGCGUACUUUGUGGUGGACAGUC___AGUCUACCAUGUUUCAUUUAAUUACGGAACAAUCUGCCAAAUAGUUGCAAAAUGAGAAUAGUUGGUCGGCAAAC ..((((((((.((((((((((((........((((((((........))))))))((((((..........))))))............))))))...))))))))))))))........ (-26.58 = -27.90 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:12 2006