Locus 1978

Sequence ID 2R_DroMel_CAF1
Location 7,467,155 – 7,467,247
Length 92
Max. P 0.801576
window3273

overview

Window 3

Location 7,467,155 – 7,467,247
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 92.38
Mean single sequence MFE -19.22
Consensus MFE -14.84
Energy contribution -14.68
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.89
Structure conservation index 0.77
SVM decision value 0.62
SVM RNA-class probability 0.801576
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7467155 92 - 20766785
GGCUUGAAAAACAAUUACCUAGCCGUACCCAAGUAACCAAUGCUCUCGAAAGAGUUCAAAAGGUUACACUAAAACCUCAGUUUAUGGAGCUU
(((((.(.((((...(((......))).....((((((..((..(((....)))..))...))))))............)))).).))))). ( -22.40)
>DroSec_CAF1 83682 92 - 1
GGCUUGAAAAACAAUUACCUAGCCGUACCCAAGUAUCCAAAGCUCUCGAAAGAGUUCAAAAGGUUACACUAAAACCACAGUUUUUGGAGCUU
(((((.((((((.............................(..(((....)))..)....((((.......))))...)))))).))))). ( -20.60)
>DroSim_CAF1 75916 92 - 1
GGCUUGAAAAACAAUUACCUAGCCGUACCCAAGUAUCCAAAGCUCUCGAAAGAGUUCAAAAGGUUACACUAAAACCUCAGUUUAUGGAGCUU
((((................))))......((((.((((((((((((....)))......(((((.......))))).))))).)))))))) ( -20.49)
>DroEre_CAF1 83223 91 - 1
GGCUUAAAAAACAAUUACCUAACCGUACCCAAGAUUCCAACUCGCUCGAAAGAGUUCAA-AGGUUACACUAAAACCUCAGUUUAUGGAGCUU
(((((...((((...............................((((....))))....-(((((.......)))))..))))...))))). ( -17.00)
>DroYak_CAF1 81872 91 - 1
GGCUUGAAAAGCAAUUACCUAACCGUACCCAAGUUUCCAACUCGCUCAAAAGAGUUCAA-AGGUUACACAAAAACCUCAGUUUAUGGAGCUU
(((((.(.((((..........................(((((........)))))...-(((((.......)))))..)))).).))))). ( -15.60)
>consensus
GGCUUGAAAAACAAUUACCUAGCCGUACCCAAGUAUCCAAAGCUCUCGAAAGAGUUCAAAAGGUUACACUAAAACCUCAGUUUAUGGAGCUU
(((((.(.((((................................(((....))).......((((.......))))...)))).).))))). (-14.84 = -14.68 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:56 2006