Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,467,008 – 7,467,122 |
Length | 114 |
Max. P | 0.646984 |
Location | 7,467,008 – 7,467,122 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 88.27 |
Mean single sequence MFE | -27.96 |
Consensus MFE | -20.80 |
Energy contribution | -20.88 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.14 |
Mean z-score | -1.72 |
Structure conservation index | 0.74 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.646984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7467008 114 - 20766785 GAGCCAUAAAAAGACCCACACACCCAAGGCCUAUACUGUUGGGCCCACCACUAACACUCCUUGAUAAAAGCCAAAAGGGUUAGCUUUUGGCUGUUA---GUUACCAGUUAGCAGCUU ((((.......................((((((......)))))).....(((((.........(((.(((((((((......))))))))).)))---.......)))))..)))) ( -28.49) >DroSec_CAF1 83532 117 - 1 GAGCCAUAAAAAGACCCACACACCCAAGGCCUAUACUGUUGGGCCCACCACUAACACUCCUUGAUAAAAGCCAAAAGGGUUGGCUUUUGGCUGUUAGCAGUUACCAGUUAGCAGCUU ((((((.......((((..........((((((......))))))..............(((.....)))......))))))))))..((((((((((........)))))))))). ( -34.51) >DroSim_CAF1 75770 113 - 1 GAGCCAUAA-AAGACCCACACACCCAAGGCCUAUACUGUGUGGCCCACCACCAACACUCCUUGAUAAAAGCCAAAAGGGUUGGCUUUUGGCUGUUA---GUUACCAGUUAGCAGCUU .........-..............(((((.......((.((((....)))))).....))))).((((((((((.....))))))))))(((((((---(.......)))))))).. ( -29.20) >DroEre_CAF1 83087 103 - 1 CAGCCAUAAAAAGACCCACACACCCAAGGCUCAUGCUAUCGGGCCC---ACUAACACUCCUUGAUAAAAGCCAAAAGGGUUG-------GCUGUUA---GUUACCA-UUAGCAGCUU ............(((((..........(((((........))))).---..........(((.....)))......)))))(-------(((((((---((....)-))))))))). ( -25.00) >DroYak_CAF1 81735 104 - 1 UAGCCAUAAAAAGACUCACACACCCAAGGCUUAUACCAUUGGGCCC---ACUAACACUCCUUGAUAAAAGCCAAAAGGGUUG-------GCUGUUA---GUUACCAGUUAGCAGCUU ..................((.((((..(((((.((.((..(((...---.......)))..)).)).)))))....))))))-------(((((((---(.......)))))))).. ( -22.60) >consensus GAGCCAUAAAAAGACCCACACACCCAAGGCCUAUACUGUUGGGCCCACCACUAACACUCCUUGAUAAAAGCCAAAAGGGUUGGCUUUUGGCUGUUA___GUUACCAGUUAGCAGCUU ............(((((..........((((((......))))))..............(((.....)))......)))))........(((((((............))))))).. (-20.80 = -20.88 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:55 2006