Locus 1975

Sequence ID 2R_DroMel_CAF1
Location 7,465,381 – 7,465,472
Length 91
Max. P 0.802955
window3269

overview

Window 9

Location 7,465,381 – 7,465,472
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 96.04
Mean single sequence MFE -21.93
Consensus MFE -20.37
Energy contribution -20.57
Covariance contribution 0.20
Combinations/Pair 1.04
Mean z-score -1.12
Structure conservation index 0.93
SVM decision value 0.62
SVM RNA-class probability 0.802955
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7465381 91 + 20766785
ACCGUCUGAUUCACAAACCGAAUCGCAGUUGGGAUCUCAAUUCCGAAUCUGCUAUGCGUAGCUCGCACAACAUGAUCGUCAUAACAAGGCA
...(((((((((.......)))))((((((.(((.......))).)).))))..((((.....))))...................)))). ( -22.10)
>DroSec_CAF1 81879 91 + 1
ACCGUCUGAUUCACAAACCGAAUCGCAGUUGGGAUCUCAAUUCCGAAUCUGCUAUGCGUAGCUCGCACAACAUGAUCGUCAUAACAAGGCA
...(((((((((.......)))))((((((.(((.......))).)).))))..((((.....))))...................)))). ( -22.10)
>DroSim_CAF1 74109 91 + 1
ACCGUCUGAUUCACAAGCCGAAUCGCAGUUGGGAUCUCAAUUCCGAAUCUGCUAUGCGUAGCUCGCACAACAUGAUCGUCAUAACAAGGCA
...(((((((((.......)))))((((((.(((.......))).)).))))..((((.....))))...................)))). ( -22.10)
>DroEre_CAF1 81660 91 + 1
ACUGUCUGAUUCACAAACGGAAUCGCAGUUGGGAUCUCAAUUCCGAAUCUGCUAUGCGUAGCUCGCACAACAUGAUCGUCAUAACAAGGCA
...(((((((((.......)))))((((((.(((.......))).)).))))..((((.....))))...................)))). ( -21.70)
>DroYak_CAF1 80291 91 + 1
ACCGUCUGAUUCACAAACCGAAUCGCAGUUGGGAUCUCAAUUCCGAAUCUGCUAUGCGUAGCUCGCACAACAUGAUCGUCAUAACAAGGCA
...(((((((((.......)))))((((((.(((.......))).)).))))..((((.....))))...................)))). ( -22.10)
>DroAna_CAF1 79005 91 + 1
UCCGUCUGAUUCACAGCCCGAAUCGCAGUUGGGAUCUCAAUUUCGAAUCUGCGAUGCGUAGCUCGCACAACAUGCUCGUCAUAACAAGCAA
((.(.(((.....))).).))((((((((((..((....))..)))..)))))))(((.....)))......((((.((....)).)))). ( -21.50)
>consensus
ACCGUCUGAUUCACAAACCGAAUCGCAGUUGGGAUCUCAAUUCCGAAUCUGCUAUGCGUAGCUCGCACAACAUGAUCGUCAUAACAAGGCA
...(((((((((.......)))))(((((((((((....)))))))..))))..((((.....))))...................)))). (-20.37 = -20.57 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:52 2006