Locus 1974

Sequence ID 2R_DroMel_CAF1
Location 7,461,017 – 7,461,116
Length 99
Max. P 0.996982
window3268

overview

Window 8

Location 7,461,017 – 7,461,116
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 93.48
Mean single sequence MFE -23.77
Consensus MFE -21.71
Energy contribution -21.99
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -1.94
Structure conservation index 0.91
SVM decision value 2.78
SVM RNA-class probability 0.996982
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7461017 99 - 20766785
CGCCACCCACAAAAAACCAGCAAGGCCCUUCAAACUAAAUAAUGAAAUUAGUGUGGGCGAGUGGAUCAUAUUUUCCUAACACUUGUCUGCGGUCGGCAU
.((((((..........(((((((((((.....(((((.........)))))..))))....(((........))).....)))).))).))).))).. ( -24.90)
>DroSec_CAF1 77549 98 - 1
CGCCACCCACCAA-AACCACCAAAGCCCUUCAAACUAAAUAAUGAAAUUAGUGUGGGCGAGUGGAUCAUAUUUUCCUAACACUUGUCUGCGGUCGGCAU
.((((((......-...................(((((.........)))))(..((((((((................))))))))..)))).))).. ( -24.49)
>DroSim_CAF1 69681 98 - 1
CGCCACCCACCAA-AACCACCAAAGCCCUUCAAACUAAAUAAUGAAAUUAGUGUGGGCGAGUGGAUCAUAUUUUCCUAACACUUGUCUGCGGUCGGCAU
.((((((......-...................(((((.........)))))(..((((((((................))))))))..)))).))).. ( -24.49)
>DroEre_CAF1 77264 96 - 1
CGCCACCCACCAA-AACC--CUUAACCCUUCCAAUUAAAUAAUGAAAUUAGUGUGGGCGAGUGGAUCAUAUUUUCCUAACACUUGUCUGCGGUCGGCAU
.((((((......-....--.............(((((.........)))))(..((((((((................))))))))..)))).))).. ( -22.19)
>DroYak_CAF1 75830 96 - 1
CACCACCCACCAA-AACC--CUUAGCCCUUCAAAUUAAAUAAUGAAAUUACUGUGGGCGAGUGGAUCAUAUUUUCCUAACACUUGUCUGCGGUUGGCAU
.............-....--....(((.((((..........))))...((((..((((((((................))))))))..)))).))).. ( -22.79)
>consensus
CGCCACCCACCAA_AACCA_CAAAGCCCUUCAAACUAAAUAAUGAAAUUAGUGUGGGCGAGUGGAUCAUAUUUUCCUAACACUUGUCUGCGGUCGGCAU
.((((((..........................(((((.........)))))(..((((((((................))))))))..)))).))).. (-21.71 = -21.99 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:51 2006