Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,451,133 – 7,451,234 |
Length | 101 |
Max. P | 0.553379 |
Location | 7,451,133 – 7,451,234 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 92.55 |
Mean single sequence MFE | -18.35 |
Consensus MFE | -14.59 |
Energy contribution | -14.63 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.43 |
Structure conservation index | 0.80 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553379 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7451133 101 - 20766785 GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCACAUGACUUUUGCCUAGUCACAACUGAUC----------------UCCAGAUCU ....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....((((----------------....)))). ( -18.24) >DroSec_CAF1 67571 101 - 1 GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUC----------------UCCAGAUCU ....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....((((----------------....)))). ( -18.54) >DroSim_CAF1 59718 101 - 1 GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUC----------------UCCAGAUCU ....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....((((----------------....)))). ( -18.54) >DroEre_CAF1 67604 101 - 1 GCAUUGCCUUGGCAUUAUAGUAGUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUC----------------UCCAGAUCU (((((....((((((((.(((.((....))))).))))))))........)))))...........(((((.......))))).....((((----------------....)))). ( -16.00) >DroYak_CAF1 65920 117 - 1 GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUCUCCACAUCUCCAGAUCUCCAGAUCU ....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....(((((....(((....)))....))))). ( -20.44) >consensus GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUC________________UCCAGAUCU ....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....((((....................)))). (-14.59 = -14.63 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:50 2006