Locus 1972

Sequence ID 2R_DroMel_CAF1
Location 7,450,402 – 7,450,500
Length 98
Max. P 0.758264
window3266

overview

Window 6

Location 7,450,402 – 7,450,500
Length 98
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 80.93
Mean single sequence MFE -35.34
Consensus MFE -14.97
Energy contribution -16.00
Covariance contribution 1.03
Combinations/Pair 1.17
Mean z-score -3.06
Structure conservation index 0.42
SVM decision value 0.49
SVM RNA-class probability 0.758264
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7450402 98 - 20766785
AUGGCAUAUACAAAUAAAUUACGGCCG-AAAUGAGUCGGCUGC---UGCUGCCUUUUGUCUG-CUUGGUGGUAGUGAAAGGCGACUCUCGGCUGUGGCCAUUA
(((((.(((....)))...((((((((-(...((((((((...---.)))((((((((.(((-((....)))))))))))))))))))))))))))))))).. ( -43.30)
>DroPse_CAF1 92914 89 - 1
AUGGCCUAUACAAAUAAAUUACAGCCCAAAACGAGU-GUCUGC---UG--GUCUUUUGUGUG-GCGGCUGCGAGUGAAAGGC-ACCCCCGGC------UAUUA
...(((.(((((((..(....((((...........-....))---))--.)..))))))))-))(((((.(.(((.....)-)).).))))------).... ( -22.36)
>DroSec_CAF1 66830 101 - 1
AUGGCAUAUACAAAUAAAUUACGGCCG-AAAUGAGUCGGCUGCUGCUGCUGCCUUUUGUCUG-CUUGGUGGUAGUGAAAGGCGACUCUCGGCUGUGGCCAUUA
(((((.(((....)))...((((((((-(...((((((.((..((((((..((.........-...))..))))))..)).)))))))))))))))))))).. ( -44.40)
>DroEre_CAF1 66877 98 - 1
AUGGCAUAUACAAAUAAAUUACGGCCG-AAAUGAGUCGGCUGC---UGCUGCCUUUUGUCUG-CUCGGUGGUAGUGAAAGGCGACUCUCGGCUGUGGCCAUUA
(((((.(((....)))...((((((((-(...((((((((...---.)))((((((((.(((-((....)))))))))))))))))))))))))))))))).. ( -42.50)
>DroAna_CAF1 64796 91 - 1
AUGGCAUAUACAAAUAAAUUACGGCCG-AAAUGAGUUCGCUGC---UGCUGCCUUUUGUCU--------GGCAGUGAAAGGCGACUCUUGGCUCUGGCCAUUA
(((((.(((....)))......(((((-(...((((.((((..---(((((((........--------)))))))...))))))))))))))...))))).. ( -32.30)
>DroPer_CAF1 62240 90 - 1
AUGGCCUAUACAAAUAAAUUACAGCCCAAAACGAGU-GUCUGC---UG--GUCUUUUGUGUGGGCGGCUGCGAGUGAAAGGC-ACCCCCGGC------UAUUA
...(((((((((((..(....((((...........-....))---))--.)..)))))))))))(((((.(.(((.....)-)).).))))------).... ( -27.16)
>consensus
AUGGCAUAUACAAAUAAAUUACGGCCG_AAAUGAGUCGGCUGC___UGCUGCCUUUUGUCUG_CUGGGUGGUAGUGAAAGGCGACUCUCGGCUGUGGCCAUUA
(((((.(((....)))......(((((.....(((((.((.......)).((((((..(((........))..)..))))))))))).)))))...))))).. (-14.97 = -16.00 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:49 2006