Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,436,919 – 7,437,024 |
Length | 105 |
Max. P | 0.988232 |
Location | 7,436,919 – 7,437,024 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 79.76 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -22.06 |
Energy contribution | -21.98 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.14 |
Mean z-score | -2.42 |
Structure conservation index | 0.81 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7436919 105 + 20766785 ACAGGAAUUUCCGCUGAUUGGCAAUGCCAAGUAAUGACCUUGCCGUGGCAUUGCUACUACACAGUAAGAAAUAACAUAGGUUUUGAAUCUAAA---AUAUAUGCAAGA-- ......(((((.((((..(((((((((((.((((.....))))..))))))))))).....))))..)))))..((((.((((((....))))---)).)))).....-- ( -26.90) >DroSec_CAF1 53255 106 + 1 ACAGGAAUUUCCGCUGAAUGGCAAUGCCAAGUAGUGACCUUGCCGUGGCAUUGCUACUACACAGUAAAAAA-AACAUAGAUUUAGAAUCUAAA---AUAUAAGCAAGAGU ...((.....))(((...(((((((((((.((((.....))))..)))))))))))...............-....(((((.....)))))..---.....)))...... ( -25.50) >DroSim_CAF1 44855 98 + 1 ACAGGAAUUUCCGCUGAAUGGCAAUGCCAAGUAAUGACCUUGCCGUGGCAUUGCUACUACACAGUAACAAAACACAUAUUUUU-------GAA---UUGUAAG--AGUCU ...((.....))((((..(((((((((((.((((.....))))..))))))))))).....))))..(((((.......))))-------)..---.......--..... ( -23.40) >DroEre_CAF1 52957 107 + 1 ACAGGAAUUUCCACUGAAUGGCAAUGCCAAGCAAUGACCUUGCGGUGGCAUUGCUACUGCACGGAAAAAAAUAAAAUAGUUGUUUAAUCCAUA---AUAGAUGCACAGGU ...(((.(((((..((..(((((((((((.((((.....))))..)))))))))))...)).))))).((((((.....))))))..)))...---.............. ( -30.60) >DroYak_CAF1 51456 110 + 1 ACAGGAAUUUCCACUGAGUGGCAAUGCCAAGUAAUGACCUUGCGGUGGCAUUGCUACUGCACAGAGAAAAAUAUCAUAGUUGUUGCACCCAUAUAUACAUAUCCAAAGGU ...(((..........(((((((((((((.((((.....))))..)))))))))))))((((((.((......))....))).)))...............)))...... ( -30.60) >consensus ACAGGAAUUUCCGCUGAAUGGCAAUGCCAAGUAAUGACCUUGCCGUGGCAUUGCUACUACACAGUAAAAAAUAACAUAGUUUUUGAAUCCAAA___AUAUAUGCAAGAGU ...((.....))((((..(((((((((((.((((.....))))..))))))))))).....))))............................................. (-22.06 = -21.98 + -0.08)
Location | 7,436,919 – 7,437,024 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 79.76 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -16.82 |
Energy contribution | -16.34 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.20 |
Mean z-score | -1.53 |
Structure conservation index | 0.66 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7436919 105 - 20766785 --UCUUGCAUAUAU---UUUAGAUUCAAAACCUAUGUUAUUUCUUACUGUGUAGUAGCAAUGCCACGGCAAGGUCAUUACUUGGCAUUGCCAAUCAGCGGAAAUUCCUGU --....(((((..(---(((......))))..))))).((((((..(((.((.(((....))).))(((((.((((.....)))).)))))...))).))))))...... ( -21.90) >DroSec_CAF1 53255 106 - 1 ACUCUUGCUUAUAU---UUUAGAUUCUAAAUCUAUGUU-UUUUUUACUGUGUAGUAGCAAUGCCACGGCAAGGUCACUACUUGGCAUUGCCAUUCAGCGGAAAUUCCUGU ..............---..(((((.....)))))....-.......((((..(((.(((((((((.(...((....)).).))))))))).)))..)))).......... ( -21.90) >DroSim_CAF1 44855 98 - 1 AGACU--CUUACAA---UUC-------AAAAAUAUGUGUUUUGUUACUGUGUAGUAGCAAUGCCACGGCAAGGUCAUUACUUGGCAUUGCCAUUCAGCGGAAAUUCCUGU .....--.......---...-------........(((..((((((((....))))))))...)))(((((.((((.....)))).))))).....((((......)))) ( -24.10) >DroEre_CAF1 52957 107 - 1 ACCUGUGCAUCUAU---UAUGGAUUAAACAACUAUUUUAUUUUUUUCCGUGCAGUAGCAAUGCCACCGCAAGGUCAUUGCUUGGCAUUGCCAUUCAGUGGAAAUUCCUGU ...(((..((((..---...))))...))).............((((((((.(((.(((((((((..((((.....)))).))))))))).))))).))))))....... ( -28.30) >DroYak_CAF1 51456 110 - 1 ACCUUUGGAUAUGUAUAUAUGGGUGCAACAACUAUGAUAUUUUUCUCUGUGCAGUAGCAAUGCCACCGCAAGGUCAUUACUUGGCAUUGCCACUCAGUGGAAAUUCCUGU ......(((..(((((......))))).............(((((.(((...(((.(((((((((((....)))........)))))))).)))))).))))).)))... ( -30.50) >consensus ACCCUUGCAUAUAU___UUUAGAUUCAAAAACUAUGUUAUUUUUUACUGUGUAGUAGCAAUGCCACGGCAAGGUCAUUACUUGGCAUUGCCAUUCAGCGGAAAUUCCUGU ..............................................(((((.(((.(((((((((......(((....)))))))))))).))))).))).......... (-16.82 = -16.34 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:45 2006