Locus 1967

Sequence ID 2R_DroMel_CAF1
Location 7,433,128 – 7,433,238
Length 110
Max. P 0.961090
window3250

overview

Window 0

Location 7,433,128 – 7,433,238
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.30
Mean single sequence MFE -31.72
Consensus MFE -28.28
Energy contribution -28.52
Covariance contribution 0.24
Combinations/Pair 1.10
Mean z-score -1.61
Structure conservation index 0.89
SVM decision value 1.52
SVM RNA-class probability 0.961090
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7433128 110 + 20766785
UGGCACAAAUUGUAUGACGUUUUUAUGCUAUUUGCCUGCUGGGCCAUGAAUAAUUGAUUUACACGGUGUUUGUGUAUUUGGCCCAGCCUUCUCGUAAAUCUAUUCGCCAG----------
((((.(((((.((((((.....)))))).)))))...(((((((((.............((((((.....))))))..)))))))))..................)))).---------- ( -34.26)
>DroSec_CAF1 49471 114 + 1
UGGCACAAAUUGUAUGACGUUUUUAUGCCCUUUGCCUGCUGGGCCAUGAAUAAUUGAUUUACACGGUGUUUGUGUAUUUGGCCCGGCCUUCUCGUAAAUCUAUUCGCCAGUAGC------
((((.((((..((((((.....))))))..))))...(((((((((.............((((((.....))))))..)))))))))..................)))).....------ ( -31.76)
>DroSim_CAF1 41052 114 + 1
UGGCACAAAUUGUAUGACGUUUUUAUGCCAUUUGCCUGCUGGGCCAUGAAUAAUUGAUUUACACGGUGUUUGUGUAUUUGGCCCGGCUUUCUCGUAAAUCUAUUCGCCAGUAGC------
((((.(((((.((((((.....)))))).)))))...(((((((((.............((((((.....))))))..)))))))))..................)))).....------ ( -33.96)
>DroEre_CAF1 49186 114 + 1
UGGCACAAAUUGUAUGACGUUUUUAUGCUAUUUGCCUGCUGGGGCAUGAAUAAUUGAUUUACAUGGUGUUUGUGUAUUUGGCCUGGCCUUCUCGUAAAUCUAUUCGCCAGUAGC------
((((..((((.((((((.....)))))).))))(((.((..(((((..((((..((.....))...))))..))).))..))..)))..................)))).....------ ( -26.70)
>DroYak_CAF1 47644 120 + 1
UGGCACAAAUUGUAUGACGUUUUUAUGCUAUUUGCCUGCUGGGGCAUGAAUAAUUGAUUUACACGGUGUUUGUGCAUUUGGCCUGGCCUUCUCGUAAAUCUAUUCGCCAGUAGCAACUGC
.((((..(((.((((((.....)))))).)))))))(((((.(((..(((((...(((((((..(((((....))))).(((...))).....)))))))))))))))..)))))..... ( -31.90)
>consensus
UGGCACAAAUUGUAUGACGUUUUUAUGCUAUUUGCCUGCUGGGCCAUGAAUAAUUGAUUUACACGGUGUUUGUGUAUUUGGCCCGGCCUUCUCGUAAAUCUAUUCGCCAGUAGC______
((((.(((((.((((((.....)))))).)))))...(((((((((.............((((((.....))))))..)))))))))..................))))........... (-28.28 = -28.52 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:34 2006