Locus 1966

Sequence ID 2R_DroMel_CAF1
Location 7,426,106 – 7,426,215
Length 109
Max. P 0.894978
window3249

overview

Window 9

Location 7,426,106 – 7,426,215
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 95.23
Mean single sequence MFE -34.74
Consensus MFE -32.18
Energy contribution -32.42
Covariance contribution 0.24
Combinations/Pair 1.10
Mean z-score -1.35
Structure conservation index 0.93
SVM decision value 0.98
SVM RNA-class probability 0.894978
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7426106 109 - 20766785
GCCCGCCAGCGGAGCAUCUCCGCAUCUCGGUCUGAAUACGAAUCCAAAUCCAAGCCAGAAUUGGAGCAAGUGAGCAGGUCGACACAAUGGCGCCGUCCCAAUGCCCUAA
...(((((((((((...))))))...(((..(((..(((...(((((.((.......)).)))))....)))..)))..))).....)))))................. ( -36.70)
>DroSec_CAF1 42458 109 - 1
GCCCGCCAGCGGAGCAUCUCCGCAUCUCGGUCUGAAUACGAAUCCAAAUCCGAGCCAGAAUUGGAGCAAGUGAGCAGGUCGACACAAUGGCGCCGUCCCAAUGCCCUAA
...(((((((((((...))))))...(((..(((..(((...(((((.((.......)).)))))....)))..)))..))).....)))))................. ( -36.70)
>DroSim_CAF1 34031 109 - 1
GCCCGCCAGCGGAGCAUCUCCGCAUCUCGGUCUGAAUACGAAUCCAAAUCGGAGCCAGAAUUGGAGCAAGUGAGCAGGUCGACACAAUGGCGCCGUCCCAAUGCCCUAA
...(((((((((((...))))))...(((..(((..(((...(((((.((.......)).)))))....)))..)))..))).....)))))................. ( -37.90)
>DroEre_CAF1 42156 109 - 1
GCCCGCUAGUGGAGCAUCUCCGCAUCUGAGUCUGAAUACGAAUCCAAAUCCGAACCAGAAUUGGAGCAAGUGAACAGGCCGACACAAUGGCGCAGCCCCAAUGCCCUAA
((.(((((((((((...))))))...((.(((((..(((...(((((.((.......)).)))))....)))..)))))))......)))))..))............. ( -28.70)
>DroYak_CAF1 40554 109 - 1
GCCCGCCAGCGGAGCAUCUCCGCAUCUGAGUCUGAAUACGAAUCCAAAUCCGAGCCAGAAUUGGAGCAAGUGAGCAGGCCGACACAAUGGCGCAGUCCCAAUGCCCUAA
....((((((((((...))))))...((.(((((..(((...(((((.((.......)).)))))....)))..)))))))......))))(((.......)))..... ( -33.70)
>consensus
GCCCGCCAGCGGAGCAUCUCCGCAUCUCGGUCUGAAUACGAAUCCAAAUCCGAGCCAGAAUUGGAGCAAGUGAGCAGGUCGACACAAUGGCGCCGUCCCAAUGCCCUAA
...(((((((((((...))))))...((((((((..(((...(((((.((.......)).)))))....)))..)))))))).....)))))................. (-32.18 = -32.42 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:33 2006