| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,410,753 – 7,410,873 |
| Length | 120 |
| Max. P | 0.918701 |
| Location | 7,410,753 – 7,410,873 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -44.23 |
| Consensus MFE | -41.99 |
| Energy contribution | -41.93 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7410753 120 + 20766785 GCUGUGCGUGACAUGAGGCAGACCGUGGCUGUCGGUGUCAUUAAGGCUGUCAACUUCAAGGAUGCCUCCGGUGGCAAGGUCACCAAGGCCGCCGAGAAGGCCACCAAGGGCAAGAAGUAG (((....(((((((..(((((.(....)))))).)))))))...))).....(((((.....(((((..((((((..((((.....))))..(.....)))))))..))))).))))).. ( -45.90) >DroVir_CAF1 25094 120 + 1 GCUGUACGUGACAUGAGACAGACUGUCGCUGUCGGUGUCAUCAAGGCUGUCAACUUCAAGGACGCUUCUGGUGGCAAGGUCACCAAGGCCGCCGAGAAGGCCACCAAGGGCAAGAAGUAG (((....(((((((..(((((.......))))).)))))))...))).....(((((.......(((((((((((..((...))...)))))).)))))(((......)))..))))).. ( -45.30) >DroGri_CAF1 25222 120 + 1 GCUGUGCGUGACAUGAGACAGACCGUCGCUGUCGGUGUCAUCAAGUCUGUCAACUUCAAGGACGCUUCCGGUGGCAAGGUCACCAAGGCCGCCGAGAAGGCCACCAAGGGCAAGAAGUAG (((.((.(((((((..(((((.......))))).))))))))))))......(((((.......(((((((((((..((...))...))))))).))))(((......)))..))))).. ( -44.20) >DroWil_CAF1 28732 120 + 1 GCUGUCCGUGACAUGAGACAGACCGUCGCUGUGGGUGUUAUCAAGGCUGUCAACUUCAAGGAUGCCUCCGGUGGCAAGGUCACCAAGGCUGCCGAGAAGGCCACCAAGGGCAAGAAGUAG ..(((((.(((((...(((.....)))(((.(((......))).)))))))).((((..((..((((..((((((...)))))).))))..))..))))........)))))........ ( -39.80) >DroMoj_CAF1 25053 120 + 1 GCUGUCCGUGACAUGAGACAGACUGUCGCUGUCGGUGUCAUCAAGGCUGUCAACUUCAAGGAUGCUUCCGGUGGCAAGGUCACCAAGGCCGCCGAGAAGGCCACCAAGGGCAAGAAGUAG (((....(((((((..(((((.......))))).)))))))...))).....(((((.......(((((((((((..((...))...))))))).))))(((......)))..))))).. ( -46.80) >DroAna_CAF1 25743 120 + 1 GCUGUCCGUGACAUGAGGCAGACCGUUGCUGUCGGUGUCAUCAAGGCUGUUAACUUCAAGGAUGCUUCCGGUGGCAAGGUCACCAAGGCUGCCGAGAAGGCCACCAAGGGCAAGAAGUAG (((....(((((((..(((((.......))))).)))))))...))).....(((((.......(((((((..((..((...))...))..))).))))(((......)))..))))).. ( -43.40) >consensus GCUGUCCGUGACAUGAGACAGACCGUCGCUGUCGGUGUCAUCAAGGCUGUCAACUUCAAGGAUGCUUCCGGUGGCAAGGUCACCAAGGCCGCCGAGAAGGCCACCAAGGGCAAGAAGUAG (((....(((((((..(((((.......))))).)))))))...))).....(((((.......(((((((((((..((...))...))))))).))))(((......)))..))))).. (-41.99 = -41.93 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:31 2006