Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,410,009 – 7,410,129 |
Length | 120 |
Max. P | 0.848317 |
Location | 7,410,009 – 7,410,129 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.78 |
Mean single sequence MFE | -40.50 |
Consensus MFE | -37.69 |
Energy contribution | -36.55 |
Covariance contribution | -1.14 |
Combinations/Pair | 1.18 |
Mean z-score | -1.21 |
Structure conservation index | 0.93 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7410009 120 + 20766785 UACAUCAAGAAGAUCGGCUACAACCCAGCCGCCGUUGCCUUCGUGCCCAUUUCCGGAUGGCACGGCGACAACAUGUUGGAACCCUCUACCAACAUGCCCUGGUUCAAGGGAUGGAAGGUG ..((((........(((((.......)))))((((((((...(((((.(((....))))))))))))))..((((((((.........))))))))((((......))))..))..)))) ( -42.70) >DroVir_CAF1 24350 120 + 1 UACAUCAAGAAGAUCGGCUACAACCCGGCGGCCGUUGCCUUCGUGCCCAUCUCCGGAUGGCACGGCGACAACAUGUUGGAACCAUCGACCAACAUGCCAUGGUUUAAGGGAUGGAAGGUG ..((((....((((((((..(......)..)))((((((...(((((.(((....))))))))))))))..((((((((.........))))))))....)))))....))))....... ( -42.10) >DroGri_CAF1 24478 120 + 1 UACAUCAAGAAGAUCGGCUACAACCCGGCGGCUGUUGCCUUCGUGCCCAUUUCCGGAUGGCACGGUGACAACAUGUUGGAACCAUCGACCAACAUGCCCUGGUUCAAGGGAUGGAAGGUG ..............((((..(......)..))))..(((((((((((.(((....))))))))(....)..((((((((.........))))))))((((......))))...)))))). ( -39.00) >DroWil_CAF1 27988 120 + 1 UACAUCAAGAAGAUCGGUUACAACCCAGCCGCUGUUGCCUUCGUGCCAAUCUCCGGAUGGCACGGCGACAACAUGUUGGAACCAUCAACCAACAUGCCAUGGUUCAAGGGAUGGAAGGUU ...........((((.....((.((((((((.(((((((...((((((.((....))))))))))))))).((((((((.........))))))))...)))))...))).))...)))) ( -39.60) >DroMoj_CAF1 24309 120 + 1 UACAUCAAGAAGAUCGGCUACAACCCGGCGGCUGUUGCCUUUGUGCCCAUCUCCGGAUGGCACGGCGACAACAUGUUGGAACCAUCGACCAACAUGCCCUGGUUCAAGGGAUGGAAGGUG ..((((..(((....(....)...((((.((((((((((...(((((.(((....)))))))))))))))..(((((((.........)))))))))))))))))....))))....... ( -40.80) >DroAna_CAF1 24999 120 + 1 UACAUCAAGAAGAUCGGUUACAACCCAGCUGCCGUCGCUUUCGUGCCCAUUUCCGGAUGGCACGGCGACAACAUGUUGGAACCCUCCACCAACAUGCCCUGGUUCAAGGGAUGGAAGGUU ...........((((.....((.(((....((((((((...((((((.(((....))))))))))))))..((((((((.........))))))))....)))....))).))...)))) ( -38.80) >consensus UACAUCAAGAAGAUCGGCUACAACCCAGCGGCCGUUGCCUUCGUGCCCAUCUCCGGAUGGCACGGCGACAACAUGUUGGAACCAUCGACCAACAUGCCCUGGUUCAAGGGAUGGAAGGUG ..((((.....(((((((..(......)..)))((((((...(((((.(((....))))))))))))))..((((((((.........))))))))....)))).....))))....... (-37.69 = -36.55 + -1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:30 2006