Locus 1958

Sequence ID 2R_DroMel_CAF1
Location 7,397,863 – 7,397,983
Length 120
Max. P 0.746095
window3238

overview

Window 8

Location 7,397,863 – 7,397,983
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.44
Mean single sequence MFE -38.07
Consensus MFE -21.57
Energy contribution -22.18
Covariance contribution 0.62
Combinations/Pair 1.25
Mean z-score -2.16
Structure conservation index 0.57
SVM decision value 0.46
SVM RNA-class probability 0.746095
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7397863 120 + 20766785
GCAUUCUGGAUAAGGAGAAGCACCACGUGGUGCGAGUUCGGAUCCAAUUGGGUGAGAAAACUCAAACAGAAACUCUCGUACAAGUUUCGCUCGAUAGAGCCGCACAGGUUUCUGGCGCAG
((....(((((..(((...(((((....)))))...)))..)))))..((..((((....))))..))((((((........))))))((((....)))).((.(((....))))))).. ( -40.10)
>DroVir_CAF1 13724 120 + 1
GCAUCGCGUAUGAGCAGCAGCACCAGCUGAUGCGAUUCCGGAUCCAAUUGUGUGAGAAAGCUCAAACAGAAGCUUUCGUACAGAUUACGCUCAAUCGAGCCGCACAAAUUCCGGGCGCAU
.....((((....(((.((((....)))).)))....(((((.....(((((((.(((((((........)))))))...........((((....)))))))))))..))))))))).. ( -45.70)
>DroGri_CAF1 13763 120 + 1
GCAUCUCGUAUGAGCAGCAACACCAACUGAUGUGAUUCCGGAUCCAGUUGAGUGAGAAAACUCAAGCAGAAGCUCUCGUACAGAUUUCGCUCAAUGGAGCCGCACAAAUUUCGGGCACAA
((((((.(((((((.(((..(((((((((((.((....)).)).)))))).))).((....))........))))))))))))))...((((....)))).))................. ( -34.70)
>DroWil_CAF1 13786 120 + 1
GCAUCACGUAUCAGUAGAAGAACCAACUGAUGCGAUUCGGGAUCCAAUUGAGUAAGAAAACUUAGACAGAAGCUCUCAUACAAAUUCCUCUCAAUGGAACCGCAUAAAUUUCUAGCGCAA
((....(((((((((.(......).)))))))))((.(((..((((.(((((((((....))))....((.....))............))))))))).))).))...........)).. ( -27.60)
>DroMoj_CAF1 13604 120 + 1
GCAUUACGUAUGAGCAGCAACACCAUUUGAUGUGACUCCGGAUCCAGUUGUGUCAGAAAACUCAGGCAGAAGCUCUCAUACAGAUUACGCUCAAUCGAGCCACACAGAUUCCGUGCGCAU
((((...(((((((.(((.......(((((((..(((........)))..)))))))....((.....)).)))))))))).......((((....))))............)))).... ( -31.50)
>DroAna_CAF1 13776 120 + 1
GCGUUCUGGAUGAGUAGCAGGACCACGUGAUGCGAUUCCGGGUCCAACUGAGUGAGGAAACUCAGGCAGAAGCUCUCGUACAGAUUCCUCUCAAUGGAGCCGCACAAAUUCCGGGCGCAA
((((.(((((.(((.(((.(((((.((.((......)))))))))..(((..((((....))))..)))..))))))((.(.(.((((.......))))).).))....))))))))).. ( -48.80)
>consensus
GCAUCACGUAUGAGCAGCAGCACCAACUGAUGCGAUUCCGGAUCCAAUUGAGUGAGAAAACUCAAACAGAAGCUCUCGUACAGAUUACGCUCAAUGGAGCCGCACAAAUUCCGGGCGCAA
((.....(((((((.(((..........(((.((....)).)))...(((..((((....))))..)))..)))))))))).......((((....))))..............)).... (-21.57 = -22.18 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:22 2006