Locus 1956

Sequence ID 2R_DroMel_CAF1
Location 7,391,274 – 7,391,378
Length 104
Max. P 0.669731
window3233

overview

Window 3

Location 7,391,274 – 7,391,378
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 76.73
Mean single sequence MFE -27.55
Consensus MFE -18.94
Energy contribution -17.83
Covariance contribution -1.11
Combinations/Pair 1.48
Mean z-score -1.16
Structure conservation index 0.69
SVM decision value 0.29
SVM RNA-class probability 0.669731
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7391274 104 + 20766785
UCACUUAGUUUCCUCACAUAUUCCAGCUCUUUUAGUAGUUGCCUUGCAUUUUCCUUGGCCUGCAAGAGAUUAUUGACUUCUCCACUAUAUCUGGAAGUUAAUAG
...........................((((((.((((..(((.............))))))))))))).(((((((((((...........))))))))))). ( -19.72)
>DroPse_CAF1 7943 104 + 1
GCACUCAGCUGCGUCACGUAGUCCAGCUCCUUCAGCAGCUGGCUGCCACUCUCCAGGGUCUGGCGGUAAUUGUUGGCCCGGCCACUGUAGCGGGGAGCCAGCAG
((....(((((.(.(.....).))))))......)).(((((((.((.(.((.(((((((.(((.(.......).))).)))).))).)).))).))))))).. ( -43.30)
>DroSec_CAF1 7475 104 + 1
UCACUUAAAUUCCUCACAUAUUCCAGCUCUUUUAGUAGUUGCCUUGCAUUUUCCUUGACCUGCAAGAGAUUAUUGACUUCUACACUAUAUCUGGAAGUCAAUAG
............(((........((((((.....).)))))..(((((............))))))))..((((((((((((.........)))))))))))). ( -21.20)
>DroEre_CAF1 7260 104 + 1
UCACUUAAGUUCCUCACAUAUUCCAGCUCUUUUAGUAGUUGCCCAGCAUUUUCCUUGACCUGCAAGAGAUUAUUGACUGCUCCACUAUAUCUGGGAGUCAAUAA
............(((........((((((.....).)))))....(((............)))..))).(((((((((.(.(((.......))))))))))))) ( -17.50)
>DroYak_CAF1 5836 104 + 1
UCACUUGAGUUCCUCACAUAUUCCAGCUCUUUUAGGAGUUGCCUAGCAUUUUCCUUGACCUGCAAGAAAUUAUUGACUGCUCCACUAUAUCUGGGAGUCAACAA
...((((.((.....))......(((.((....(((((.(((...)))..))))).)).)))))))......((((((.(.(((.......))))))))))... ( -18.90)
>DroPer_CAF1 8048 104 + 1
GCACUCAGCUGCGUCACGUAGUCCAGCUCCUUCAGCAGCUGGCUGCCACUCUCCAGGGUCUGGCGGCUAUUGUUGGCCCGGCCACUGUAGCGGGGAGCCAGCAG
((.....((((((...))))))...((((((((.((((.(((((((((..((....))..))))(((((....))))).))))))))).).)))))))..)).. ( -44.70)
>consensus
UCACUUAACUUCCUCACAUAUUCCAGCUCUUUUAGUAGUUGCCUAGCAUUUUCCUUGACCUGCAAGAGAUUAUUGACUCCUCCACUAUAUCUGGGAGUCAACAG
.......................(((((........))))).((((((..((....))..))))))...((((((((((((...........)))))))))))) (-18.94 = -17.83 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:16 2006