Locus 1955

Sequence ID 2R_DroMel_CAF1
Location 7,390,738 – 7,390,857
Length 119
Max. P 0.660632
window3232

overview

Window 2

Location 7,390,738 – 7,390,857
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.03
Mean single sequence MFE -37.67
Consensus MFE -21.47
Energy contribution -21.45
Covariance contribution -0.02
Combinations/Pair 1.55
Mean z-score -1.54
Structure conservation index 0.57
SVM decision value 0.27
SVM RNA-class probability 0.660632
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7390738 119 - 20766785
GGAUAUUACUCACUUCCUGCACUCGAAUGGCGAUUGUGAGUCGCUUUAUAAGCUGUUUCAGCUUAUUCACUCGGAGUGGGAAAACUUUCAAGGACUUCAUGUCGCCAC-AAGUGCCCAGC
(((...........))).(((((.(..(((((((...(((((.(((..(((((((...)))))))(((((.....))))).........))))))))...))))))))-.)))))..... ( -35.30)
>DroSec_CAF1 6939 119 - 1
GGAUAUUACUCAAUUCCUGCACUCGAAUGGCGAUUGUGUGUCACUUUAUAAGCUGUUCCAGCUUAUUCACUCGGAAUGGGAAAACUUCCAAGGACUUCAUGUCGCCAC-AAGUGCCCAAC
(((...........))).(((((.(..(((((((.(((.(((.....((((((((...))))))))...((.((((.(......))))).)))))..)))))))))))-.)))))..... ( -34.30)
>DroEre_CAF1 6723 119 - 1
GGAUAUUACCCACUUCCUGUACUCGAAUGGCGAUUGUGAGUCGCUUUAUAGGCUGUUCCAGCUUAUUAACUCGGAAUGGGAAAACUUCCAAGGACUUGAUGUCGCCAC-AAGUGCCCAAU
(((...........))).(((((.(..(((((((...(((((.....((((((((...))))))))...((.((((.(......))))).)))))))...))))))))-.)))))..... ( -34.50)
>DroYak_CAF1 5300 120 - 1
GGAUAUUACUCACUUCCUGCACUCGAAUGGCGACUGUGAGUCGCUUUAUAAGCUGUUCCAGCUUAUUAACUCGGAAUGGGAAAACUUCCAAGGACCAAAUGUCGCCACCAAGUGCCCAAC
(((...........))).(((((....(((((((..((.(((.....((((((((...))))))))...((.((((.(......))))).)))))))...)))))))...)))))..... ( -37.60)
>DroAna_CAF1 6664 119 - 1
GGACCUCACCCAUUUCCUGCAGUCCAAUGGCGACUGCGGUGUGCUUCACAAGUUAUUCCUCUUGCUGCGCUCCGAAUGGAGUAACUUCCAAGGCGACCAUGCUGUCAC-AGGGGCUCAAU
(..((((.........(((((((((....).))))))))(((((((...((((((((((..(((........)))..))))))))))...))))(((......)))))-)))))..)... ( -38.30)
>DroPer_CAF1 7500 119 - 1
GGAUCUGACGCACUUCCUGCAGUCGAACGGCGACUGCCAGACGCUGUACAACAUGCUGCGCGUCGUUCGCUCCGAUUGGAUUGGUUUUACGGGGGCCCAGGCGGCCUC-CAGUGGCCAGC
((((..(((((.....(((((((((.....)))))).)))..((.(((.....))).)))))))))))(((((....))).((((..((((((((((.....))))))-).))))))))) ( -46.00)
>consensus
GGAUAUUACUCACUUCCUGCACUCGAAUGGCGACUGUGAGUCGCUUUAUAAGCUGUUCCAGCUUAUUCACUCGGAAUGGGAAAACUUCCAAGGACUUCAUGUCGCCAC_AAGUGCCCAAC
(((...........))).(((((....(((((((.....(((.(((.((((((((...))))))))...........((((....)))))))))).....)))))))...)))))..... (-21.47 = -21.45 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:15 2006