| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,367,216 – 7,367,456 |
| Length | 240 |
| Max. P | 0.650219 |
| Location | 7,367,216 – 7,367,336 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.67 |
| Mean single sequence MFE | -37.40 |
| Consensus MFE | -35.71 |
| Energy contribution | -35.93 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7367216 120 + 20766785 UUCGAUCCAAACUAAUCACAUUUCCCUAUAUCGACAGCAUUUUGGGCGCCGGAUGUGCCGUGCUCACAAUUCCCUUCGCCAAGACUCUGGUUUUGGUGGGUCUAUCGGCCGCUGUCUACG ...(((........)))...............((((((....(((((((.((.....)))))))))..........(((((((((....)))))))))((((....)))))))))).... ( -38.30) >DroSim_CAF1 1447 120 + 1 UUCGAUCCAAACUAAUGACAUUUCCCUAUAUCGACAGCAUUUUGGGCGCCGGAUGUGCCGUGCUCACAAUUCCCUUCGCCAAGACUCUGGUCUUAGUAGGUCUAUCGGCCGCUGUCUAUG ................................((((((....(((((((.((.....)))))))))...........((.(((((....))))).)).((((....)))))))))).... ( -32.20) >DroYak_CAF1 1563 120 + 1 UUCGACCCAGUCUAAGGGGAUUUUCCUAUAUCGACAGCAUUUUGGGCGCCGGAUGUGCCGUGCUCACAAUUCCGUUCGCUAAGACCCUGGUUUUAGUGGGUCUAUCGGCCGCUGUCUACG .....(((.......)))(((........)))((((((....(((((((.((.....)))))))))..........(((((((((....)))))))))((((....)))))))))).... ( -41.70) >consensus UUCGAUCCAAACUAAUGACAUUUCCCUAUAUCGACAGCAUUUUGGGCGCCGGAUGUGCCGUGCUCACAAUUCCCUUCGCCAAGACUCUGGUUUUAGUGGGUCUAUCGGCCGCUGUCUACG ................................((((((....(((((((.((.....)))))))))..........(((((((((....)))))))))((((....)))))))))).... (-35.71 = -35.93 + 0.23)
| Location | 7,367,336 – 7,367,456 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -49.13 |
| Consensus MFE | -45.62 |
| Energy contribution | -45.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.93 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.510985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7367336 120 + 20766785 GACUUUGCCUGGGUAGCUGGUAUGUACUUAUGCCGGUCCUCCUUGCGGACGUCUUUGGCACGGACAGGAUCAGCUCGAGCUACGGGCUGGUGAGGAUGUUCCAGAGCAUCGGGGCCAUAU ((((((((..(((..(((((((((....)))))))))..)))..))))).)))..((((.........(((((((((.....)))))))))...((((((....))))))...))))... ( -48.20) >DroSim_CAF1 1567 120 + 1 GACUGUGCCUGGGUAGCUGGUAUGUCCUUAUGCCGGUCCUCCUUGCGGACGUCUUUGGCACGGACAGGAUCAGUUCGAGCUACGGGCUGGUGAGGAUGUUCCAGAGCAUCGGGGCCAUAU ...((.((((.(((..((((.((((((((..(((((((((((....)))......((((.(((((.......))))).)))).)))))))))))))))).))))...))).))))))... ( -51.20) >DroYak_CAF1 1683 120 + 1 GACUGUGCCUGGGUAGCUGGUAUGUCCUUAUGCCGGUGCUCCUUGCGGACGUCUUUGGAACGGACAGGAUCAGUUCGAGCUACGGGCUGGUGAGGAUGUUCCAGAGCAUCGGGGCCAUUU ...((.((((.(((.(((((((((....)))))))))..(((....))).(.((((((((((..(...(((((((((.....)))))))))..)..)))))))))))))).))))))... ( -48.00) >consensus GACUGUGCCUGGGUAGCUGGUAUGUCCUUAUGCCGGUCCUCCUUGCGGACGUCUUUGGCACGGACAGGAUCAGUUCGAGCUACGGGCUGGUGAGGAUGUUCCAGAGCAUCGGGGCCAUAU ......((((.(((.(((((((((....))))))((..(((((..((..((((....).)))..).....(((((((.....))))))))..)))).)..))..)))))).))))..... (-45.62 = -45.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:07 2006