Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,452,945 – 1,453,061 |
Length | 116 |
Max. P | 0.967754 |
Location | 1,452,945 – 1,453,061 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.30 |
Mean single sequence MFE | -33.55 |
Consensus MFE | -24.70 |
Energy contribution | -25.32 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.12 |
Mean z-score | -1.63 |
Structure conservation index | 0.74 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.967754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1452945 116 + 20766785 GGGUGGAGAAUUUUCUCAAUAUAAUCUGAUGAUAUCGUGGUGCAACUUUAGCAGGUUCGGCCAUGCCGACUGCGAGGUGCACUACCCGGCUGCGUGGAGGAAAGUGGUCCUUG----AAC ((((.((((....)))).....................((((((.((((.((((..(((((...)))))))))))))))))))))))(((..(..........)..)))....----... ( -37.20) >DroSec_CAF1 71364 89 + 1 GGGUGUAGAAUUUUCUCAAUAUAAUCGGAUGAUA-CGCGGUGCAACUUAAGCAGGUUCGGCCAUGCCGACUGCUGGGUGCACUACCC------------------------------AAC (((((((..((((.............))))..))-)..((((((.((((.((((..(((((...)))))))))))))))))))))))------------------------------... ( -30.02) >DroSim_CAF1 70047 89 + 1 GGGUGGAGAAUUUUCUCAAUAUAAUCGGAUGAUA-CGCGGUGCAACUUAAGCAGGAUCGGCCAUGCCGACUGCUAGGUGCACUACCC------------------------------AAC ((((.((((....)))).................-...((((((.((((.((((..(((((...)))))))))))))))))))))))------------------------------... ( -32.80) >DroYak_CAF1 75490 108 + 1 GGGUGGAGAAUUUCCUCAAUAUA-UUAUGUUAU--CGCGGUGCAACUUGAG----GUUGGCCAUACCGACUGCGAGGUGCACUACCCGGAUACCC-----AUGGCGGUCCUUACACUUAC ((((((((......)))......-.......((--(((((((((.((((.(----(((((.....)))))).)))).))))))....((....))-----...))))).....))))).. ( -34.20) >consensus GGGUGGAGAAUUUUCUCAAUAUAAUCGGAUGAUA_CGCGGUGCAACUUAAGCAGGUUCGGCCAUGCCGACUGCGAGGUGCACUACCC______________________________AAC ((((.(((......))).....................((((((.((((.((((..((((.....))))))))))))))))))))))................................. (-24.70 = -25.32 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:07 2006