Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,359,887 – 7,360,034 |
Length | 147 |
Max. P | 0.841006 |
Location | 7,359,887 – 7,359,995 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 88.27 |
Mean single sequence MFE | -34.92 |
Consensus MFE | -26.86 |
Energy contribution | -27.54 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.07 |
Mean z-score | -1.93 |
Structure conservation index | 0.77 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7359887 108 - 20766785 CGGGAAGGAAUCCCGUCCGGUAG-GGACUACUAGCAUUCGCAAGUGACGUCCAGCAACCGGAGGACCCCCAACUGUAGAAUCCGCAUCACCAUCCUAAUCC-CAACAAAC .((((((((...((.((((((..-((((((((.((....)).))))..))))....)))))))).........(((.......)))......))))..)))-)....... ( -32.30) >DroSec_CAF1 6845 108 - 1 CGGGAAGGAUUCCCGGCCGGAAG-GGACUACUAGCAUCCGCAAGUGGCGUCCAACAACCGGAGGACUCCCUACCGUAGAAUCCGCAUCACCAUCCUAAUCC-AAAGCAAC .((((.((((((...((.((.((-((((((((.((....)).))))).((((..(....)..))))))))).)))).))))))...)).))..........-........ ( -34.70) >DroSim_CAF1 13292 108 - 1 CGGGAAGGAUUCCCGGCCGGAAG-GGACUACUAGCAUCCGCAAGUGGCGUCCAACAACCGGAGGACUCCCUACCGUAGAAUCCGCAUCACCAUCCUAAUCC-CAACCAAC .((((.((((((...((.((.((-((((((((.((....)).))))).((((..(....)..))))))))).)))).))))))(......).......)))-)....... ( -36.00) >DroEre_CAF1 6862 109 - 1 CGGGAAGGAUUCCCGUCCGGAAGGGGACUACUAGCAUCCGCAAGUGGCGUCCAAUAACCGGAGGUUUCCCUACCGAGGAAUCCGCAUCACCAUUGUAGAAC-CAAUCAAC .((((.(((((((....(((.(((((((((((.((....)).)))))(.(((.......))).).)))))).))).)))))))...)).))..........-........ ( -36.30) >DroYak_CAF1 6231 110 - 1 CGGGAAGGAUUCCCGGCCGGAAGGGGACUACUAGCAUCCGCAAGUGGCGUCCAGCAACCGGAGGUCUCCCUUCCGAAGAUUCCGCAUUACCAUCCUAUAACCCAACCAAC .(((.(((((.....(((((((((((...(((.((....)).)))(((.(((.......))).))))))))))))..(....)))......)))))....)))....... ( -35.30) >consensus CGGGAAGGAUUCCCGGCCGGAAG_GGACUACUAGCAUCCGCAAGUGGCGUCCAACAACCGGAGGACUCCCUACCGUAGAAUCCGCAUCACCAUCCUAAUCC_CAACCAAC .((((.((((((.(((((((....((((((((.((....)).))))..)))).....))))(((....))).)))..))))))...)).))................... (-26.86 = -27.54 + 0.68)
Location | 7,359,916 – 7,360,034 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 84.92 |
Mean single sequence MFE | -38.90 |
Consensus MFE | -29.42 |
Energy contribution | -29.54 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.71 |
Structure conservation index | 0.76 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7359916 118 + 20766785 UUCUACAGUUGGGGGUCCUCCGGUUGCUGGACGUCACUUGCGAAUGCUAGUAGUCC-CUACCGGACGGGAUUCCUUCCCGAAAUCUUACUCCUCUGGUCCCGACUCCUUAUACCAGCAA .......((((((((.((((((((....((((...(((.((....)).))).))))-..))))))(((((.....)))))...............)).)))(....).....))))).. ( -40.80) >DroSec_CAF1 6874 118 + 1 UUCUACGGUAGGGAGUCCUCCGGUUGUUGGACGCCACUUGCGGAUGCUAGUAGUCC-CUUCCGGCCGGGAAUCCUUCCCGAAAUCGUACUCCUCCGGUCCCGACUACUUAUACUAGCAA .....(((.(((....)))))).(((((((.(((.....)))......(((((((.-...((((.(((((.....))))).....(....)..))))....)))))))....))))))) ( -35.70) >DroSim_CAF1 13321 118 + 1 UUCUACGGUAGGGAGUCCUCCGGUUGUUGGACGCCACUUGCGGAUGCUAGUAGUCC-CUUCCGGCCGGGAAUCCUUCCCGAAAUCGUACUCCUUCGGUCCCGACUCCUUAUACUAGCAA ..(((..((((((((((.((((((((..((((...(((.((....)).))).))))-....))))))))........(((((..........)))))....))))))))))..)))... ( -39.70) >DroEre_CAF1 6891 107 + 1 UUCCUCGGUAGGGAAACCUCCGGUUAUUGGACGCCACUUGCGGAUGCUAGUAGUCCCCUUCCGGACGGGAAUCCUUCCCGAAAUCGUACUCCU------------CCUAGUACUAGCAA .(((((((.(((....))))))).....)))(((.....)))..((((((((((((......))))((((.....))))..............------------.....)))))))). ( -37.20) >DroYak_CAF1 6261 119 + 1 AUCUUCGGAAGGGAGACCUCCGGUUGCUGGACGCCACUUGCGGAUGCUAGUAGUCCCCUUCCGGCCGGGAAUCCUUCCCGAUCUCGUACUUCUCCGGUUCCGACUCCAAGUACUAGCUA .....((((((((.(((.......((((((.(((.....)))....)))))))))))))))))(((((((.....))))).....((((((...((....)).....))))))..)).. ( -41.11) >consensus UUCUACGGUAGGGAGUCCUCCGGUUGUUGGACGCCACUUGCGGAUGCUAGUAGUCC_CUUCCGGCCGGGAAUCCUUCCCGAAAUCGUACUCCUCCGGUCCCGACUCCUUAUACUAGCAA .....(((..(((((....((((.....((((...(((.((....)).))).))))....)))).(((((.....)))))........))))))))....................... (-29.42 = -29.54 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:03 2006