Locus 1947

Sequence ID 2R_DroMel_CAF1
Location 7,357,020 – 7,357,127
Length 107
Max. P 0.500000
window3217

overview

Window 7

Location 7,357,020 – 7,357,127
Length 107
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 88.45
Mean single sequence MFE -23.06
Consensus MFE -16.70
Energy contribution -19.34
Covariance contribution 2.64
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.72
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7357020 107 - 20766785
-AAAUCUCAUUUCAUCAACCGCCACUAAUGAGUCAGUCGCAGAAAUAAACUAAAUUGUUGUAAUGUCCUAACAAACUUAUGUUUUUGCGCAUUGAUGCGGCGUGGGAA
-...(((((..........((((.(....).((((((((((((((((.......((((((........)))))).....)))))))))).))))))..))))))))). ( -25.50)
>DroSec_CAF1 3951 107 - 1
-AAAUCUCAUUUUAUCAACCGCCACUAAUGAGUCAGUCGCAGAAAUAAACUAAAUUGUUGUAAUGUCUUAACAAACUUAUGUUUUUGCGCAUUGAUGCGGCGUGGGAA
-...(((((..........((((.(....).((((((((((((((((.......((((((........)))))).....)))))))))).))))))..))))))))). ( -26.30)
>DroSim_CAF1 10404 108 - 1
CAAAUCUCAUUUCAUCAACCGCCACUAAUGAGUCAGUCGCAGAAAUAAACUAAAUUGUUGUAAUGUCUUAACAAACUUAUGUUUUUGCGCAUUGAUGCGGCGUGGGAA
....(((((..........((((.(....).((((((((((((((((.......((((((........)))))).....)))))))))).))))))..))))))))). ( -26.30)
>DroEre_CAF1 4033 107 - 1
-AAAUUGCAUUUCAUCAACUGCCACUAAUGAGUCAGUCGCAAAAAUAAACUAAAUUGUUGUAAUGUCUUAACAAAAUUAUGUUUUUGCGCAUUGAUGCGGCGUGGGAA
-....................((((...((.((((((((((((((((.......((((((........)))))).....)))))))))).)))))).))..))))... ( -25.40)
>DroYak_CAF1 3333 86 - 1
-AAAUUGCAUUUCAUCAACUGCCACUAAUGAGUCAGUCGCAGAAAUAAACUAAAUUGUUGUAAUGUCUUAACAAAAUUAUGUUUUUG---------------------
-.((..((((........((((.(((........))).))))............((((((........))))))....))))..)).--------------------- ( -11.80)
>consensus
_AAAUCUCAUUUCAUCAACCGCCACUAAUGAGUCAGUCGCAGAAAUAAACUAAAUUGUUGUAAUGUCUUAACAAACUUAUGUUUUUGCGCAUUGAUGCGGCGUGGGAA
.....................((((...((.((((((((((((((((.......((((((........)))))).....)))))))))).)))))).))..))))... (-16.70 = -19.34 +   2.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:01 2006