Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,343,087 – 7,343,187 |
Length | 100 |
Max. P | 0.964168 |
Location | 7,343,087 – 7,343,187 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 96.20 |
Mean single sequence MFE | -21.48 |
Consensus MFE | -18.84 |
Energy contribution | -18.44 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.09 |
Mean z-score | -1.78 |
Structure conservation index | 0.88 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.964168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7343087 100 - 20766785 GUAAGCGGAAACGGAAAUGGAGUCCAGAGGAGGAGAGGAAUGCAGCAAAAGGCACAAAGUGCAUGCGGUACUCAGUUUUGAUUCUUAAUAAACUAAAAUA .((((((....))(((((.((((((......)))......(((.(((....((((...)))).))).)))))).)))))....))))............. ( -19.70) >DroSec_CAF1 138693 100 - 1 GUAAGCGGAAACGGAAAUGGAGUCCAGAGGAGACGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA .((((((....))..(((.(((((....(....)(((...((((.(....)((((...)))).))))...))).))))).)))))))............. ( -23.10) >DroSim_CAF1 143159 100 - 1 GUAAGCGGAAACGGAAAUGGAGUCCAGAGGAGACGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA .((((((....))..(((.(((((....(....)(((...((((.(....)((((...)))).))))...))).))))).)))))))............. ( -23.10) >DroEre_CAF1 138636 100 - 1 GUAAGCGGAAGCGGAAAUAGAGUCCAGAGGAGAAGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA ....((....))......((((((.(((......(((...((((.(....)((((...)))).))))...)))...)))))))))............... ( -20.90) >DroYak_CAF1 143175 100 - 1 GUAAGCGGAAACGGAAAUAGAGUCCAAAGGAGGAGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA .....((....)).....((((((.(((....(((.....((((.(....)((((...)))).))))...)))...)))))))))............... ( -20.60) >consensus GUAAGCGGAAACGGAAAUGGAGUCCAGAGGAGAAGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA .....((....)).....((((((.(((......(((...((((.(....)((((...)))).))))...)))...)))))))))............... (-18.84 = -18.44 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:58 2006