Locus 1944

Sequence ID 2R_DroMel_CAF1
Location 7,337,598 – 7,337,700
Length 102
Max. P 0.810809
window3213

overview

Window 3

Location 7,337,598 – 7,337,700
Length 102
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 75.19
Mean single sequence MFE -17.22
Consensus MFE -0.48
Energy contribution -0.32
Covariance contribution -0.16
Combinations/Pair 1.57
Mean z-score -1.60
Structure conservation index 0.03
SVM decision value 0.65
SVM RNA-class probability 0.810809
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7337598 102 + 20766785
AU--AAUCUUCAAUUAUUAUCUCAUCAUUGAGCUGCAUCAUCACCUAAUAAAUUUAGGUAACCUUACACUUUUAUUGAGUAUGCACACUUGAUACCCAAAUUGU
..--......(((((.....((((....)))).(((((....((((((.....))))))........((((.....))))))))).............))))). ( -15.30)
>DroSec_CAF1 133243 100 + 1
----AUUCUUCAAUUGGUAUCUGACUAUAAAGCUGCAUCAUCACCUAAUAAAUUUAGGUAACCUUACACUUUUAUUGAGUAUGCGCACAUGAUACCCAAAUUGU
----......(((((((((((((........((.((((....((((((.....))))))........((((.....)))))))))).)).))))))..))))). ( -18.60)
>DroSim_CAF1 137688 100 + 1
----AUUCUUCAAUUGGUAUCUGACUAUAAAGCUGCAUCAUCACCUAAUAAAUAUAGGUAACCUUACACUUUUAUUGAGUAUGCGCACAUGAUACCCAAAUUGU
----......(((((((((((((........((.((((....(((((.......)))))........((((.....)))))))))).)).))))))..))))). ( -16.60)
>DroEre_CAF1 132974 95 + 1
AUAAGUGCUGCAAUUAGUACCUUAGCAUA--------GUGUCACCCAAUAAAUGAGUGCAACCUUAAACUUUUAUU-GGCCGGCACACUUGAUACCCAAAUUGU
.(((((((((....))))).)))).....--------(((((..(((((((..((((..........)))))))))-))..))))).................. ( -19.50)
>DroYak_CAF1 137391 104 + 1
AUAUGUUCUGCAAUUAUUAGCUCUUCAUAGAGCUGCAGUAUCAACAAAUAAAUAAAAGCAACUUUAAACUUGUAUUAGGAAGGCACACUUCAUACCCAAAUCGC
...((..(((((.......(((((....))))))))))...))..............((((........)))).....((((.....))))............. ( -16.11)
>consensus
AU__AUUCUUCAAUUAGUAUCUCACCAUAAAGCUGCAUCAUCACCUAAUAAAUAUAGGUAACCUUACACUUUUAUUGAGUAUGCACACUUGAUACCCAAAUUGU
.........................................................(((..((((.........))))..))).................... ( -0.48 =  -0.32 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:57 2006