Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,332,404 – 7,332,499 |
Length | 95 |
Max. P | 0.883243 |
Location | 7,332,404 – 7,332,499 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 77.09 |
Mean single sequence MFE | -22.81 |
Consensus MFE | -8.46 |
Energy contribution | -8.18 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.24 |
Mean z-score | -2.14 |
Structure conservation index | 0.37 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7332404 95 + 20766785 UCACUUGUCAAUUGUUCAGACAGCCCAUCUACAUAGCUGACAUUCACAUGGGCUGGCACACUAUUUAUGCAUUUCUCGUAGUAAUAAUCAAGUGA------------ (((((((...(((((((...((((((((...................))))))))(((.........)))..........).)))))))))))))------------ ( -21.81) >DroSec_CAF1 128128 95 + 1 UCGCUUGUCAAUUGUAUAGACAUCCCAUCUGAAUAUCUUACAUUCACAUGGGCUGGCUCACUACUUAUGCAUUUCCCGAAGUAACAAUCAAGUGA------------ (((((((...(((((.....((.(((((.(((((.......))))).))))).))......(((((............)))))))))))))))))------------ ( -22.00) >DroSim_CAF1 132538 95 + 1 UCGCUUGUCAAUGAUUCAGACAGCCCAUCUGAAUAUCUUAUAUUCACAUGGGCUGGCUCACAACUUAUGCAUUUCCCGAAGUAAUAAUCAAGUGA------------ (((((((.......(((...((((((((.(((((((...))))))).))))))))((...........)).......)))........)))))))------------ ( -29.96) >DroEre_CAF1 128087 103 + 1 GCGCUUGUCAAUUGCACAGACAUCCCAUCUACCAAACUGACAUUUGCAUGUGC----UCACUAUUUAUGCAUUUCCCAAAGUAAUAAUCAAGUGAUUUCGCGACGGG ...((((((....(((((..((.....((.........))....))..)))))----(((((..((((..((((....)))).))))...)))))......)))))) ( -17.80) >DroYak_CAF1 132249 103 + 1 UCGCUUGUCACUUGCUCAGACAUCACAUCUACCUAACUGACACUUACAUGUGC----UCACUAUUUAUGCAUUUCCCGAUGUAAUAAUCAAGUGAUUUCGCGACGGG ((((..((((((((.....(((((.............((((((......))).----)))(.......)........)))))......))))))))...)))).... ( -22.50) >consensus UCGCUUGUCAAUUGUUCAGACAUCCCAUCUACAUAACUGACAUUCACAUGGGCUGGCUCACUAUUUAUGCAUUUCCCGAAGUAAUAAUCAAGUGA____________ (((((((................(((((.((.............)).)))))...............(((..........))).....)))))))............ ( -8.46 = -8.18 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:56 2006