Locus 1942

Sequence ID 2R_DroMel_CAF1
Location 7,329,466 – 7,329,558
Length 92
Max. P 0.981935
window3211

overview

Window 1

Location 7,329,466 – 7,329,558
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -8.80
Consensus MFE -8.80
Energy contribution -8.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 1.00
SVM decision value 1.90
SVM RNA-class probability 0.981935
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7329466 92 - 20766785
UAAUUAAAUUUUCACCUAAGCAUCUUGCUUUAACUUCAUUUUGUUUGGGUUUUCUUUGUUCACUUUAAAUUUACAUUCAUACAUAUCUCUAC
.............(((((((((...((.........))...))))))))).......................................... (  -8.80)
>DroSec_CAF1 125169 92 - 1
UAAUUAAAUUUUCACCUAAGCAUCUUGCUUUAACUUCAUUUUGUUUGGGUUUUCUUUGUUCACUUUAAAUUUACAUUCAUACAUAUCUCUAC
.............(((((((((...((.........))...))))))))).......................................... (  -8.80)
>DroSim_CAF1 129652 92 - 1
UAAUUAAAUUUUCACCUAAGCAUCUUGCUUUAACUUCAUUUUGUUUGGGUUUUCUUUGUUCACUUUAAAUUUACAUUCAUACAUAUCUCUAC
.............(((((((((...((.........))...))))))))).......................................... (  -8.80)
>DroEre_CAF1 125224 92 - 1
UAAUUAAAUUUUCACCUAAGCAUCUUGCUUUAACUUCAUUUUGUUUGGGUUUUCUUUGUUCACUUUAAAUUUACAUUCAUACAUAUCUCUAC
.............(((((((((...((.........))...))))))))).......................................... (  -8.80)
>DroYak_CAF1 129036 92 - 1
UAAUUAAAUUUUCACCUAAGCAUCUUGCUUUAACUUCAUUUUGUUUGGGUUUUCUUUGUUCACUUUAAAUUUACAUUCAUACAUAUCUCUAC
.............(((((((((...((.........))...))))))))).......................................... (  -8.80)
>consensus
UAAUUAAAUUUUCACCUAAGCAUCUUGCUUUAACUUCAUUUUGUUUGGGUUUUCUUUGUUCACUUUAAAUUUACAUUCAUACAUAUCUCUAC
.............(((((((((...((.........))...))))))))).......................................... ( -8.80 =  -8.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:55 2006