Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,320,316 – 7,320,411 |
Length | 95 |
Max. P | 0.939362 |
Location | 7,320,316 – 7,320,411 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 90.76 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -26.30 |
Energy contribution | -26.82 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.03 |
Mean z-score | -1.81 |
Structure conservation index | 0.90 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7320316 95 - 20766785 UACCCCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCAGGAAUGUCGUCUGAGGCGUUCACUUCGAUGGAUGCAUUCCCGGAACUUUUACGCU .........((((((((........---...)))))((((((.((((((.(((((((((......))))...))))))))))).)))))).....))) ( -29.10) >DroSec_CAF1 115906 95 - 1 UACACCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCAGGAAUGUCGUCUGAGGCGGUUACUUCGAUGGCUGCAUUCCCGGAACUUUUACGCU .........((((((((........---...)))))((((((.(((((((.((((((((......)))))..))).))))))).)))))).....))) ( -29.40) >DroSim_CAF1 120423 95 - 1 UACACCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCAGGAAUGUCGUCUGAGGCGUUCACUUCGAUGGCUGCAUUCCCGGAACUUUUACGCU .........((((((((........---...)))))((((((.(((((((.((((((((......)))))..))).))))))).)))))).....))) ( -29.40) >DroEre_CAF1 115887 95 - 1 UCCCCCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCUGGAAUGUCGUCUGAGGCGUUCACUUCGCUGACUGCAUUCCUGGAACUUUUACGCU .........((((((((........---...)))))((((((.(((((((.(((...((((.......))))))).))))))).)))))).....))) ( -30.90) >DroYak_CAF1 118902 95 - 1 GCCCCCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCUGGAAUGUCGUCUGAGGCAUUCACUUCGAUGGCUGCAUUCCCGGAACUUUUACGCU .........((((((((........---...)))))((((((.(((((((.((((((((......)))))..))).))))))).)))))).....))) ( -29.40) >DroAna_CAF1 110083 98 - 1 CCCACCCAGAGCAUUGCCCUGGCGGCUCGUUCCAAUAGUUCCAAGAAUGUCGUCUGAGGCAUUCACUUCGAUGGCUGCUUUCCCGGAACUUUUACGCU ........((((...((....)).))))((......((((((..(((.((((((.((((......))))))))))....)))..))))))...))... ( -27.90) >consensus UACACCAAGAGCAUUGCCCCAAUGA___GUUGCAAUAGUUCCAGGAAUGUCGUCUGAGGCGUUCACUUCGAUGGCUGCAUUCCCGGAACUUUUACGCU .........((((((((..............)))))((((((.(((((((.((((((((......)))))..))).))))))).)))))).....))) (-26.30 = -26.82 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:50 2006