Locus 1935

Sequence ID 2R_DroMel_CAF1
Location 7,301,314 – 7,301,410
Length 96
Max. P 0.695794
window3198

overview

Window 8

Location 7,301,314 – 7,301,410
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 85.86
Mean single sequence MFE -24.50
Consensus MFE -18.41
Energy contribution -18.83
Covariance contribution 0.42
Combinations/Pair 1.22
Mean z-score -2.68
Structure conservation index 0.75
SVM decision value 0.34
SVM RNA-class probability 0.695794
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7301314 96 + 20766785
GCCAAAACGGUAAACGGUGAGGAAACCAAAAAAUAAAUAAAAAUAGCCAAAAUGCUUUUGGCCGGGCCUUGAGUUGGCUAUGA-AUCUGGCCAAAAC
((((...........(((......)))...............(((((((....((((..(((...)))..)))))))))))..-...))))...... ( -24.70)
>DroSec_CAF1 97051 97 + 1
GCCAAAACGGUAAACGGCGAGGAAACCAAAAAAUAAAUAAAAAUAGCCAAAAUGCUUUUGGCCGGGCCUUGAGUUGGCUAUGAAAUCUGGCCAAAAC
(((.....)))....((((.(....))...............(((((((....((((..(((...)))..)))))))))))........)))..... ( -24.80)
>DroSim_CAF1 101016 97 + 1
GCCAAAACGGUAAACGGCGAGGAAACCAAAAAAUAAGUAAAAAUAGCCAAAAUGCUUUUGGCCGGGUCUUGAGUUGGCUAUGAAAUCUGGCCAAAAC
(((.....)))....((((.(....))........((.....(((((((....((((..(((...)))..))))))))))).....)).)))..... ( -22.80)
>DroEre_CAF1 97230 94 + 1
GCCAAAACGGUAAACGGCUAGGAAACCAAAA--GAAAUAAAAAUAGCCAAAAUGCUUUUGGCCGGGCCUUGAGUUGGCUAUGA-AUCUGGCCAAAAC
(((.....)))....(((((((........(--....)....(((((((....((((..(((...)))..)))))))))))..-.)))))))..... ( -27.10)
>DroYak_CAF1 99508 94 + 1
GCCAAAACGGUAAACGGCGAGGAAACCAAAA--GAAAUAAAAAUAGCCAAAAUGCUUUUGGCCGGGCCUUGAGUUGGCUAUGA-AUCUGGCCAAAAC
(((.....)))....(((.(((........(--....)....(((((((....((((..(((...)))..)))))))))))..-.))).)))..... ( -25.00)
>DroAna_CAF1 91475 86 + 1
GCCA-AACGGUAAAUGGUAAAAAAAAUCACA--CAAA-AAAAAU------ACUGUUUUUGGCCAGGCCUUGAGGCCACACGGU-UUUUGGCCAAAAC
(((.-...)))...((((...(((((((...--((((-((....------....))))))....((((....))))....)))-)))).)))).... ( -22.60)
>consensus
GCCAAAACGGUAAACGGCGAGGAAACCAAAA__UAAAUAAAAAUAGCCAAAAUGCUUUUGGCCGGGCCUUGAGUUGGCUAUGA_AUCUGGCCAAAAC
(((.....)))....(((.(((....................(((((((....((((..(((...)))..)))))))))))....))).)))..... (-18.41 = -18.83 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:43 2006