Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,278,678 – 7,278,777 |
Length | 99 |
Max. P | 0.950653 |
Location | 7,278,678 – 7,278,777 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 88.57 |
Mean single sequence MFE | -35.02 |
Consensus MFE | -23.39 |
Energy contribution | -24.31 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.07 |
Mean z-score | -2.15 |
Structure conservation index | 0.67 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7278678 99 + 20766785 UGCCAGCCAUCGGGCGACUCUCUUCGGAUCUUUGGCUAUAUGUGUAGC--------UAUAUAGCCAUAUAGCUGGCCAACAACUCAAUUAGAUGGCAGUCUGGGGUU .((((((.....(((.....((....))....(((((((....)))))--------))....))).....))))))....(((((...(((((....)))))))))) ( -30.90) >DroSec_CAF1 74601 107 + 1 UGCCAGCCAUCGGGCGACUCUCUUCGGAUCUUCGGCCAUAUGUGUAACUAUAUAGCUAUAUAGCCAUAUAGCUGGCAAACAACUCAAUUAGAUGGCAGUCUGGGGUU (((((((....((.(((...((....))...))).)).((((((...((((((....)))))).)))))))))))))...(((((...(((((....)))))))))) ( -35.00) >DroSim_CAF1 78061 107 + 1 UGCCAGCCAUCGGGCGACUCUCUUCGGAUCUUCGGCCAUAUGUGUAGCUAUAUAGCUAUAUAGCCAUAUAGCUGGCCAACAACUCAAUUAGAUGGCAGUCUGGGGUU ..(((((((((((.(((...((....))...))).))...((..(((((((((.(((....))).)))))))))..))............))))))....))).... ( -37.40) >DroEre_CAF1 74710 105 + 1 UGCCAGCCAUCGGGCGACUCUCUUUGGAUCCUC-GCUAUAUGUGCAGCUAUACAGCGAGAUGGCCAUAUAGCUGGCCAACAACUCAAUUAGAUGGCAGCCCGGG-UU ....((((..(((((..((.(((((((...(((-(((.((((......)))).)))))).((((((......)))))).....))))..))).))..)))))))-)) ( -37.70) >DroYak_CAF1 76540 100 + 1 UGCCAGCCAUCGGGCGACUCUCUUCGGAUCUUCGGCUAUAUGUG------UAUGGCGAUAUAGCCAUAUAGCUGGCCAACAACUCAAUUAGAUGGCAGUCUGGG-GU .((((((....((.(((...((....))...))).)).....((------((((((......)))))))))))))).....((((...(((((....)))))))-)) ( -34.10) >consensus UGCCAGCCAUCGGGCGACUCUCUUCGGAUCUUCGGCUAUAUGUGUAGCUAUAUAGCUAUAUAGCCAUAUAGCUGGCCAACAACUCAAUUAGAUGGCAGUCUGGGGUU ..(((((((((.(((((..(.....)..))..((((((((((.((.................))))))))))))))).............))))))....))).... (-23.39 = -24.31 + 0.92)
Location | 7,278,678 – 7,278,777 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 88.57 |
Mean single sequence MFE | -34.52 |
Consensus MFE | -26.63 |
Energy contribution | -26.75 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -2.32 |
Structure conservation index | 0.77 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7278678 99 - 20766785 AACCCCAGACUGCCAUCUAAUUGAGUUGUUGGCCAGCUAUAUGGCUAUAUA--------GCUACACAUAUAGCCAAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCA .......(((.((((......)).)).))).(((((((((.(((((((((.--------.......)))))))))..((..(.....)..)).....))))))))). ( -31.40) >DroSec_CAF1 74601 107 - 1 AACCCCAGACUGCCAUCUAAUUGAGUUGUUUGCCAGCUAUAUGGCUAUAUAGCUAUAUAGUUACACAUAUGGCCGAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCA ......((((.((((......)).)).))))(((((((((((((((....)))))))))......(((.(((.(((...((....))...))).)))))))))))). ( -32.80) >DroSim_CAF1 78061 107 - 1 AACCCCAGACUGCCAUCUAAUUGAGUUGUUGGCCAGCUAUAUGGCUAUAUAGCUAUAUAGCUACACAUAUGGCCGAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCA ...........(((((((..(((..((.((((((((((((((((((....)))))))))))........))))))).))..)))..)))...(((....))))))). ( -39.20) >DroEre_CAF1 74710 105 - 1 AA-CCCGGGCUGCCAUCUAAUUGAGUUGUUGGCCAGCUAUAUGGCCAUCUCGCUGUAUAGCUGCACAUAUAGC-GAGGAUCCAAAGAGAGUCGCCCGAUGGCUGGCA ..-..(((((.((..(((..(((..((..((((((......)))))).((((((((((........)))))))-)))))..))))))..)).))))).......... ( -39.60) >DroYak_CAF1 76540 100 - 1 AC-CCCAGACUGCCAUCUAAUUGAGUUGUUGGCCAGCUAUAUGGCUAUAUCGCCAUA------CACAUAUAGCCGAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCA ..-....(((.((((......)).)).))).(((((((((.(((((((((.......------...)))))))))..((..(.....)..)).....))))))))). ( -29.60) >consensus AACCCCAGACUGCCAUCUAAUUGAGUUGUUGGCCAGCUAUAUGGCUAUAUAGCUAUAUAGCUACACAUAUAGCCGAAGAUCCGAAGAGAGUCGCCCGAUGGCUGGCA .......(((.((((......)).)).))).(((((((((.(((((((((................)))))))))..((..(.....)..)).....))))))))). (-26.63 = -26.75 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:36 2006