Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,449,447 – 1,449,601 |
Length | 154 |
Max. P | 0.941492 |
Location | 1,449,447 – 1,449,561 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.05 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -29.90 |
Energy contribution | -29.74 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.46 |
Structure conservation index | 0.93 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1449447 114 + 20766785 UGUCUCUUUCAUGGCUGUUAAUUUCCAGCUAUUGUUCGGCCAGCCUCCCGUUUCUGGGC------CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACG .....((((((((((((.((((........))))..))))))((((.........))))------......))))))(((..((((((.....................))))))..))) ( -29.80) >DroSec_CAF1 67609 114 + 1 UGUCUCUUUCAUGGCUGUUAAUUUCCAGCUAUUGUUCGGCCAGCCUCCCGUGCCUGGGC------CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACG .....((((((((((((........))))))......((((.(((....).))...)))------).....))))))(((..((((((.....................))))))..))) ( -32.00) >DroSim_CAF1 66485 114 + 1 UGUCUCUUUCAUGGCUGUUAAUUUCCAGCUAUUGUUCGGCCAGCCUCCCGUGCCUGGGC------CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACG .....((((((((((((........))))))......((((.(((....).))...)))------).....))))))(((..((((((.....................))))))..))) ( -32.00) >DroEre_CAF1 76995 120 + 1 UGUCUCUUUCAUGGCUGUUAAUUUCCAGCUAUUGUUCGGCCAGCCUCCCAUGCCUGGGCCCCGGCCCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACG .....((((((((((((........))))))......((((.(...((((....))))..).)))).....))))))(((..((((((.....................))))))..))) ( -35.60) >DroYak_CAF1 72569 113 + 1 UGUC-CUUUCAUGGCUGUUAAUUUCCAGCUAUUGUUCGGUCAGCCUCCCAUGCCUGGGC------CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACG ....-((((((.(((((.......(((((....))).)).))))).((((....)))).------......))))))(((..((((((.....................))))))..))) ( -30.70) >consensus UGUCUCUUUCAUGGCUGUUAAUUUCCAGCUAUUGUUCGGCCAGCCUCCCGUGCCUGGGC______CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACG .....((((((((((((.((((........))))..))))))............((((.......))))..))))))(((..((((((.....................))))))..))) (-29.90 = -29.74 + -0.16)
Location | 1,449,447 – 1,449,561 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.05 |
Mean single sequence MFE | -33.74 |
Consensus MFE | -28.30 |
Energy contribution | -28.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.84 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1449447 114 - 20766785 CGUCAGGCACAGUGAUUGCUUAAAAUUAAAUUUAUGCCCAACGCUUUCAAUUGGG------GCCCAGAAACGGGAGGCUGGCCGAACAAUAGCUGGAAAUUAACAGCCAUGAAAGAGACA .(((.((((...(((((......)))))......)))).....((((((((((.(------(((.((...(....).))))))...)))).((((........))))..)))))).))). ( -31.90) >DroSec_CAF1 67609 114 - 1 CGUCAGGCACAGUGAUUGCUUAAAAUUAAAUUUAUGCCCAACGCUUUCAAUUGGG------GCCCAGGCACGGGAGGCUGGCCGAACAAUAGCUGGAAAUUAACAGCCAUGAAAGAGACA .(((.((((...(((((......)))))......)))).....((((((((((.(------(((..(((.(....))))))))...)))).((((........))))..)))))).))). ( -33.70) >DroSim_CAF1 66485 114 - 1 CGUCAGGCACAGUGAUUGCUUAAAAUUAAAUUUAUGCCCAACGCUUUCAAUUGGG------GCCCAGGCACGGGAGGCUGGCCGAACAAUAGCUGGAAAUUAACAGCCAUGAAAGAGACA .(((.((((...(((((......)))))......)))).....((((((((((.(------(((..(((.(....))))))))...)))).((((........))))..)))))).))). ( -33.70) >DroEre_CAF1 76995 120 - 1 CGUCAGGCACAGUGAUUGCUUAAAAUUAAAUUUAUGCCCAACGCUUUCAAUUGGGGCCGGGGCCCAGGCAUGGGAGGCUGGCCGAACAAUAGCUGGAAAUUAACAGCCAUGAAAGAGACA .(((.((((...(((((......)))))......)))).....((((((((((.((((((..((((....))))...))))))...)))).((((........))))..)))))).))). ( -40.40) >DroYak_CAF1 72569 113 - 1 CGUCAGGCACAGUGAUUGCUUAAAAUUAAAUUUAUGCCCAACGCUUUCAAUUGGG------GCCCAGGCAUGGGAGGCUGACCGAACAAUAGCUGGAAAUUAACAGCCAUGAAAG-GACA .(((.((((...(((((......)))))......)))).....((((((.((((.------.((((....)))).......))))......((((........))))..))))))-))). ( -29.00) >consensus CGUCAGGCACAGUGAUUGCUUAAAAUUAAAUUUAUGCCCAACGCUUUCAAUUGGG______GCCCAGGCACGGGAGGCUGGCCGAACAAUAGCUGGAAAUUAACAGCCAUGAAAGAGACA .(((.((((...(((((......)))))......)))).....((((((((((.........(((......))).((....))...)))).((((........))))..)))))).))). (-28.30 = -28.30 + 0.00)
Location | 1,449,487 – 1,449,601 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -29.94 |
Consensus MFE | -28.70 |
Energy contribution | -28.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.03 |
Structure conservation index | 0.96 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536189 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1449487 114 + 20766785 CAGCCUCCCGUUUCUGGGC------CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACGGCUCUUGAUGUCCACGUUGUUGUUUCACGCACACAUCAAU .((((.((((....)))).------.............((..((((((.....................))))))..)))))).(((((((...(((.(......))))...))))))). ( -28.20) >DroSec_CAF1 67649 114 + 1 CAGCCUCCCGUGCCUGGGC------CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACGGCUCUUGAUGUCCACGUUGUUGUUUCACGCACACAUCAAU .((((.((((....)))).------.............((..((((((.....................))))))..)))))).(((((((...(((.(......))))...))))))). ( -28.20) >DroSim_CAF1 66525 114 + 1 CAGCCUCCCGUGCCUGGGC------CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACGGCUCUUGAUGUCCACGUUGUUGUUUCACGCACACAUCAAU .((((.((((....)))).------.............((..((((((.....................))))))..)))))).(((((((...(((.(......))))...))))))). ( -28.20) >DroEre_CAF1 77035 120 + 1 CAGCCUCCCAUGCCUGGGCCCCGGCCCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACGGCACUUGAUGUCCACGUUGUUGUUACACGCACACAUCAAU ..........((((.((((....))))...........((..((((((.....................))))))..)))))).(((((((...(((.((....)))))...))))))). ( -34.80) >DroYak_CAF1 72608 114 + 1 CAGCCUCCCAUGCCUGGGC------CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACGGCACUUGAUGUCCUCGUUGUUGUUACACGCUCACAUCAAA ..(((.((((....)))).------.............((..((((((.....................))))))..)))))..(((((((...(((.((....)))))...))))))). ( -30.30) >consensus CAGCCUCCCGUGCCUGGGC______CCCAAUUGAAAGCGUUGGGCAUAAAUUUAAUUUUAAGCAAUCACUGUGCCUGACGGCUCUUGAUGUCCACGUUGUUGUUUCACGCACACAUCAAU ..(((.........((((.......)))).........((..((((((.....................))))))..)))))..(((((((...(((.(......))))...))))))). (-28.70 = -28.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:00 2006