| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,260,879 – 7,260,973 |
| Length | 94 |
| Max. P | 0.856240 |
| Location | 7,260,879 – 7,260,973 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 81.17 |
| Mean single sequence MFE | -17.19 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7260879 94 - 20766785 CGACGGGGCAGACAUGUCUGCUAUUUUGUAUGCAAAAAAAAAAAAGAACA-AAAUAGUGAAAAACGGAAGCAGAAAGUUGAUUAAAAUUUCAUGG ...(((((((....)))))((((((((((..................)))-)))))))......))....((..(((((......)))))..)). ( -15.77) >DroPse_CAF1 46678 79 - 1 CCACACGGCAGACAUGUCUGCCG----------AAAA------AAGACCAAAAAUACUAAAAAACGGAAGCAAAAACUUGAUUAAAAUUUCAUGG .....(((((((....)))))))----------....------....(((..............(....)........(((........)))))) ( -15.90) >DroSec_CAF1 56426 89 - 1 CGACGGGGCAGACAUGUCUGCCAUUUUGUAUGCAAAAA-----AACAACA-AAAUAGUGAAAAACGGAAACAGAAAGUUGAUUAAAAUUUCAUGG ((((..((((((....))))))(((((((.((......-----..)))))-))))..........(....).....))))............... ( -18.90) >DroEre_CAF1 56558 88 - 1 CGACGGGGCAGACAUGUCUGCUAUUUUGUGUGCAAAA------AAGAACA-AAAUAGCAGAAAACGGAAGCAGAAAGUUGAUUAAAAUUUCAUGG ((((...((.......(((((((((((((...(....------..).)))-))))))))))........)).....))))............... ( -21.66) >DroAna_CAF1 52771 85 - 1 CGACGCGGCAGACAUGUCUGCCUUUUUGUGU--AAAA------AAGUAUA-AAAUAGUCA-UAACGGAAGCAAAAACUUGAUUAAAAUUUCAUGG .(((..((((((....)))))).(((((((.--....------...))))-)))..))).-...(....)......(.(((........))).). ( -17.00) >DroPer_CAF1 46272 79 - 1 CCACACGGCAGACAUGUCUGCCA----------AAAA------AAGACCAAAAAUACUAAAAAACGGAAGCAAAAACUUGAUUAAAAUUUCAUGG ......((((((....)))))).----------....------....(((..............(....)........(((........)))))) ( -13.90) >consensus CGACGCGGCAGACAUGUCUGCCAUUUUGU_U__AAAA______AAGAACA_AAAUAGUAAAAAACGGAAGCAAAAACUUGAUUAAAAUUUCAUGG ......((((((....))))))........................................................(((........)))... (-10.72 = -10.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:30 2006