| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,259,943 – 7,260,040 |
| Length | 97 |
| Max. P | 0.981463 |
| Location | 7,259,943 – 7,260,040 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 75.69 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -12.09 |
| Energy contribution | -11.90 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7259943 97 - 20766785 CCACAUGUCAAAAUCACAAAUGUCACUUAAUCCUGGCGCAGUCAAUAAGCCAGGACACCUUUUCACGAA------ACAAAUAACGAGGGAA-----ACAAACAAACAA ....................(((.......(((((((...........)))))))..(((((.......------.........)))))..-----)))......... ( -14.69) >DroEre_CAF1 55676 97 - 1 CCACAUGUCAAAAUCACAAAUGUCACUUAGUCCUGGCGCAGUCAAUAAGCCAGGACACCUUU-UACGAA------ACAAAAACAGCGGGGAA----ACAAACAAACAA ((((((.............))))......((((((((...........))))))))......-......------...........))(...----.).......... ( -19.72) >DroYak_CAF1 57365 108 - 1 CCACAUGUCAAAGUCACAAAUGUCACUUAAUCCUGGCGCAGUCAAUAAGCUAGGACACCUUUUUACAAAAAAAAAAAAAAAACAGAGGGGAAUCAAACAAACAAACAA ((...(((..((((.((....)).))))..(((((((...........)))))))..........................)))...))................... ( -16.30) >DroAna_CAF1 51901 81 - 1 CCCUCUGCCUGAGUCACAAAUGUCAGCUAAUCCUGGCGCAGUCAAUAAGCCAGGACACCUUUUUACCAA-------CA-------AUGG-------------CAACAG .....((((..(((.((....))..)))..(((((((...........)))))))..............-------..-------..))-------------)).... ( -18.20) >consensus CCACAUGUCAAAAUCACAAAUGUCACUUAAUCCUGGCGCAGUCAAUAAGCCAGGACACCUUUUUACGAA______ACAAAAACAGAGGGGA_____ACAAACAAACAA ..............................(((((((...........)))))))..................................................... (-12.09 = -11.90 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:29 2006