Locus 1925

Sequence ID 2R_DroMel_CAF1
Location 7,250,267 – 7,250,358
Length 91
Max. P 0.624519
window3182

overview

Window 2

Location 7,250,267 – 7,250,358
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 87.85
Mean single sequence MFE -20.38
Consensus MFE -15.66
Energy contribution -17.02
Covariance contribution 1.36
Combinations/Pair 1.12
Mean z-score -1.60
Structure conservation index 0.77
SVM decision value 0.19
SVM RNA-class probability 0.624519
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7250267 91 - 20766785
UUCUUUUUGGUUGUGGUUUAUCGUCGGUAAAUGGUAAUAGUAAAAAUACCUGUGCCAUUAGCUGUUUCUUGUUUAUGGAGCAGACCUAUCG
........(((...(((((......(((.(((((((...(((....)))...))))))).)))(((((........)))))))))).))). ( -20.80)
>DroSec_CAF1 45769 91 - 1
UUCUUUUUUAUUAUGGUUUAUCGUCGGUGAUUGGUAAUGGUAAAAAUACUUUUGCCAUUAGCUGUUUUUUGUUUAUGGAGCAGACCUAUCG
............................(((.(((((((((((((....))))))))))..(((((((........)))))))))).))). ( -20.10)
>DroSim_CAF1 48418 91 - 1
UUCUUUUUUAUUGUGGUUUAUCGUCGUUGAUUGGUAAUGGUAAAAAUACUUUUGCCAUUAGCUGUUUUUUGUUUAUGGAGCAGACCUAUCG
............................(((.(((((((((((((....))))))))))..(((((((........)))))))))).))). ( -20.10)
>DroEre_CAF1 44848 86 - 1
-----AUUGGUUCUGGUUUAUCGUUGGUGAAUGGUCAUGGUAAAAAUGCCUUUGCCAUUAGCUGUUUUUUGUUUAUGGUGCAGACCUAUCG
-----...(((.(((...((((((....(((((((.((((((((......))))))))..))))))).......))))))))))))..... ( -19.20)
>DroYak_CAF1 47510 86 - 1
-----UUUGGUUCUGGUUUAUCGUUGGUGAAUGGUAAUGGUAAAAAUACUUUCGCCAUUAGCUGUUUUUUGUUUAUGGUGCAGACCUAUCG
-----...(((.(((.((((((((((.(....).))))))))))........((((((.(((........))).))))))))))))..... ( -21.70)
>consensus
UUCUUUUUGGUUCUGGUUUAUCGUCGGUGAAUGGUAAUGGUAAAAAUACUUUUGCCAUUAGCUGUUUUUUGUUUAUGGAGCAGACCUAUCG
..............(((((......(((.((((((((.((((....)))).)))))))).)))(((((........))))))))))..... (-15.66 = -17.02 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:29 2006