Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,246,974 – 7,247,080 |
Length | 106 |
Max. P | 0.596571 |
Location | 7,246,974 – 7,247,080 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.72 |
Mean single sequence MFE | -16.37 |
Consensus MFE | -10.13 |
Energy contribution | -10.60 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.10 |
Mean z-score | -2.66 |
Structure conservation index | 0.62 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7246974 106 - 20766785 CGACCCAAUCAAAAACACAUUAAAACC-AAAAGGCCGACA-------------AAUAAACAACAACAAUUUGUCAAAGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU ...........................-....(((.((((-------------(((...........))))))).(((((((.............)))))))........)))....... ( -17.22) >DroVir_CAF1 66602 104 - 1 ---CCCAAUCAAAAACGCAUCAAAAUCGAAAAGGCCGCCA-------------AAUAAACAACAACAAUUUGUCAAUGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU ---...((((((....(((((.......(((.(((.((((-------------.....((((.......)))).....)))).............))).))).....)))))..)))))) ( -16.24) >DroGri_CAF1 52440 104 - 1 --ACCCAAUCAAAAACACAUCAAAAUC-AAAAGGCCGCCA-------------AAUAAACAACAACAAUUUGUCAAUGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU --.........................-........((((-------------.....((((.......)))).....))))......((((((.(.(((((....))))).).)))))) ( -13.20) >DroWil_CAF1 61244 85 - 1 GGACCCAAUCAAAAACGCAUUAAAAUC-AA----------------------------------ACAAUUUGUCAAAGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU ......((((((....(((((.....(-((----------------------------------.....)))...(((((((.............))))))).....)))))..)))))) ( -12.62) >DroMoj_CAF1 63894 117 - 1 --GUCCAAUCAAAAACGCAUCAAAAUC-AAAAGACCGCCAAAUACCAAUACCAAAUAAACAACAACAAUUUGUCAAUGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU --....((((((....(((((......-.......................(((((...........))))).....(((((.............))))).......)))))..)))))) ( -14.32) >DroAna_CAF1 39960 107 - 1 CGACCCAAUCAAAAACGCAUUAAAGCCCAAAGGGCCGACA-------------AAUAAACAACGACAAUUUGUCAAAGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU ......((((((....(((((...((((...)))).((((-------------(((...........))))))).(((((((.............))))))).....)))))..)))))) ( -24.62) >consensus __ACCCAAUCAAAAACGCAUCAAAAUC_AAAAGGCCGCCA_____________AAUAAACAACAACAAUUUGUCAAAGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU ......((((((....(((((........................................((((....))))....(((((.............))))).......)))))..)))))) (-10.13 = -10.60 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:25 2006