Locus 1922

Sequence ID 2R_DroMel_CAF1
Location 7,245,732 – 7,245,825
Length 93
Max. P 0.937058
window3177

overview

Window 7

Location 7,245,732 – 7,245,825
Length 93
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 76.36
Mean single sequence MFE -29.69
Consensus MFE -17.69
Energy contribution -19.97
Covariance contribution 2.28
Combinations/Pair 1.16
Mean z-score -2.00
Structure conservation index 0.60
SVM decision value 1.26
SVM RNA-class probability 0.937058
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7245732 93 + 20766785
------AGUUGGCAGAACUUGGCUUUUGGCACCUU-----UUGCGAAGCCAGUUUUCGCCGGCAGUUCACUUAGUAUGUGCCUUGUGCACACAAUCAUAGGUGU-----
------.((((((((((((.((((((..(((....-----.))))))))))))))).))))))....((((((.(.(((((.....))))).)....)))))).----- ( -34.30)
>DroVir_CAF1 64311 91 + 1
------CUUUAGCGGA------UUUCUUGCACCUUGCCUCUCGAGUGGCGCGUAC---C---UACUACAACUACUAACUGCCUUGUUCAAACAAUCCCAACAACUGUGA
------.....(.(((------((..(((.((...((......(((((...(((.---.---...)))..)))))....))...)).)))..))))))........... ( -12.10)
>DroSec_CAF1 41269 99 + 1
GUUGGCAGUUGGCAGAACUUGGCUUUUGGCACCUU-----UUGCGAAGCCAGUUUUUGCCGGCAGUCCACUUAGUAGGUGCCUUGUGCACACAAUCAUUGCUGU-----
((.(((.((((((((((.((((((((..(((....-----.))))))))))).)))))))))).))).)).((((((((((.....)))).......)))))).----- ( -35.31)
>DroSim_CAF1 43882 93 + 1
------AGUUGGCAGAACUUGGCUUUUGGCACCUU-----UUGCGAAGCCAGUUUUUGCCGGCAGUCCACUUAGUAUGUGCCUUGUGCACACAAUCAUUGGUGU-----
------.((((((((((.((((((((..(((....-----.))))))))))).))))))))))....((((.....(((((.....)))))........)))).----- ( -34.02)
>DroEre_CAF1 40591 99 + 1
GUUGGCAGUUGGCAGAACUUGGCUUUUGGCACCUU-----UUGCGAAGCCAGUUUUCGCCGGCAGUCCACUUAGUAUGUGCCUAGUGCACACAAUCAUAACUGU-----
((.(((.((((((((((((.((((((..(((....-----.))))))))))))))).)))))).))).))......(((((.....))))).............----- ( -33.10)
>DroYak_CAF1 42979 94 + 1
-----CAGUUGGCAGAACUUGGCUUUUGGCACCUU-----UUGCGAAGCCAGUUUUCGCCGGCAGUCCACUUAGUAAGUGCCUUGUGCACACAAUCAUAACUGU-----
-----..((((((((((((.((((((..(((....-----.))))))))))))))).))))))..............((((.....))))..............----- ( -29.30)
>consensus
______AGUUGGCAGAACUUGGCUUUUGGCACCUU_____UUGCGAAGCCAGUUUUCGCCGGCAGUCCACUUAGUAUGUGCCUUGUGCACACAAUCAUAACUGU_____
.......((((((((((((.((((((..(((..........))))))))))))))).))))))..............((((.....))))................... (-17.69 = -19.97 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:24 2006