Locus 1921

Sequence ID 2R_DroMel_CAF1
Location 7,228,468 – 7,228,562
Length 94
Max. P 0.998723
window3176

overview

Window 6

Location 7,228,468 – 7,228,562
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.49
Mean single sequence MFE -20.62
Consensus MFE -20.38
Energy contribution -20.26
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.90
Structure conservation index 0.99
SVM decision value 3.20
SVM RNA-class probability 0.998723
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7228468 94 - 20766785
CGCAACGACGACACGAUAUUAUUAGUUGUAUUUAUUCGAAUAUAUCUUUUGUGUAUUCUCGCGUUGCACAAAAUUUGAUUUAUUUUACGAUAGC
.((((((.(((.(((((.......)))))........((((((((.....)))))))))))))))))........................... ( -19.70)
>DroSec_CAF1 24076 94 - 1
CGCAACGACGACACGAUAUUAUUAGUUGUAUUUAUUCGAAUAUAUCUUUUGUGUAUUCUCGCGUUGCACAAAAUUUGAUUUAUUUUGCGAUAGC
.((((((.(((.(((((.......)))))........((((((((.....))))))))))))))))).((((((.......))))))....... ( -21.40)
>DroSim_CAF1 24826 94 - 1
CGCAACGACGACACGAUAUUAUUAGUUGUAUUUAUUCGAAUAUAUCUUUUGUGUAUUCUCGCGUUGCACAAAAUUUGAUUUAUUUUGCGAUAGC
.((((((.(((.(((((.......)))))........((((((((.....))))))))))))))))).((((((.......))))))....... ( -21.40)
>DroEre_CAF1 23869 94 - 1
GGCAGCGAUGACACGAUAUUAUUAGUUGUAUUUAUUCGAAUAUAUCUUUUGUGUAUUCUCGCGUUGCACAAAAUUUCAUUUAUUUUGCGUUAAC
.((((((.(((.(((((.......)))))........((((((((.....))))))))))))))))).((((((.......))))))....... ( -19.20)
>DroYak_CAF1 25197 94 - 1
CGCAACGACGACACGAUAUUAUUAGUUGUAUUUAUUCGAAUAUAUCUUUUGUGUAUUCUCGCGUUGCACAAAAUUUGAUUUAUUUUGCGGUAAC
.((((((.(((.(((((.......)))))........((((((((.....))))))))))))))))).((((((.......))))))....... ( -21.40)
>consensus
CGCAACGACGACACGAUAUUAUUAGUUGUAUUUAUUCGAAUAUAUCUUUUGUGUAUUCUCGCGUUGCACAAAAUUUGAUUUAUUUUGCGAUAGC
.((((((.(((.(((((.......)))))........((((((((.....))))))))))))))))).((((((.......))))))....... (-20.38 = -20.26 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:23 2006