Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,227,381 – 7,227,476 |
Length | 95 |
Max. P | 0.725667 |
Location | 7,227,381 – 7,227,476 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 78.03 |
Mean single sequence MFE | -20.36 |
Consensus MFE | -12.22 |
Energy contribution | -13.42 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.66 |
Structure conservation index | 0.60 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7227381 95 - 20766785 AAAACUGGGUCUGCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACUUUAUUA--AA---AAAAAAAAGGCUGAAACUAGUCACCCACCCA---- .....(((((..((((.(((((........))))).))))......................--..---........(((((....))))))))))....---- ( -25.60) >DroSec_CAF1 22864 97 - 1 AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGCGUGGCGUCCACCUGCUCCACUUUAUUAUAAA---AAAAAAAAUGCCGAAACUAGUCACCCACCCA---- .....(((((((..((((((((........)))).((((.((......)).))))...........---.........)))).....))..)))))....---- ( -18.90) >DroSim_CAF1 23631 97 - 1 AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACUUUAUUAUAAA---AACAAAAAAGCCGAAACUAGUCACCCACCCA---- .....(((((((..((((((((........))))(((((.((......)).)))))..........---.........)))).....))..)))))....---- ( -20.60) >DroEre_CAF1 22662 81 - 1 AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACGU-----------------AAAAA--AAAAGUAGUCACCCACCCA---- ....(((((...)))))..((((....))))..((((((.((....(((((......-----------------.....--...)))))..)))))))).---- ( -20.74) >DroYak_CAF1 24021 98 - 1 AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACUUUAUUAAAAACAAAACAAAAAAG--AAAACUAGUCUCCCACCCA---- ...(((((.(((.....(((((........)))))((((.((......)).))))......................))--)...)))))..........---- ( -17.90) >DroPer_CAF1 18834 80 - 1 GAAUGUGGGUCACCCCGCUAGAUAAUGAUCUAUGCG---CCAGCACCUGCCCCACUUUC---------------------GAAAACAAGUCACCCACCCACCCA (((.(((((......((((((((....))))).)))---...((....))))))).)))---------------------........................ ( -18.40) >consensus AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACUUUAUUA__AA___AA_AAAAAAG__AAAACUAGUCACCCACCCA____ .....(((((.......(((((........)))))((((.((......)).))))........................................))))).... (-12.22 = -13.42 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:22 2006