Locus 1919

Sequence ID 2R_DroMel_CAF1
Location 7,226,242 – 7,226,336
Length 94
Max. P 0.595685
window3174

overview

Window 4

Location 7,226,242 – 7,226,336
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 76.49
Mean single sequence MFE -28.49
Consensus MFE -14.48
Energy contribution -14.82
Covariance contribution 0.34
Combinations/Pair 1.28
Mean z-score -1.79
Structure conservation index 0.51
SVM decision value 0.13
SVM RNA-class probability 0.595685
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7226242 94 - 20766785
--UGCGGCUGAAACAUGUUGCAUGCUCUGCUAAUCAAGCGGACCUUGCCAAGUACAUAGCUCUGUUAUUUAGCAAGCAGUGCAC-UUGACACGACGG
--((((((........))))))...((((((.....))))))(((((.(((((.(((.(((.((((....))))))).))).))-)))...))).)) ( -26.20)
>DroSec_CAF1 21781 94 - 1
--UGCGGCUGAAACAUGUUGCAUGCUCUGCUAAACAAGCGGACUUUGCCAAGUACAUAGCUCUGUUAUUUCGCAAGCAGUUCAC-UUGGCACGACGG
--((((((........))))))...((((((.....))))))...((((((((..((.(((.(((......)))))).))..))-))))))...... ( -28.50)
>DroSim_CAF1 22571 94 - 1
--UGCGGCUGAAACAUGUUGCAUGCUCUGCUAACCAAGCGGACCUUGCCAAGUACAUAGCUCUGUUAUUCGACAAGCAGUGCAC-UUGGCACAAUGG
--((((((........))))))...((((((.....))))))((.((((((((.(((.(((.((((....))))))).))).))-))))))....)) ( -33.60)
>DroEre_CAF1 21653 94 - 1
--UGCGGCUGAAACAUGUUGCAUGCUCUGCUAACCAAGCGGACUUUGUUGAGUACGUAGCUCUGUUAUUCUGCAAGCAGUGCAC-UUCACCCGACGU
--((((((........))))))(((.(((((......(((((.......((((.....))))......))))).))))).))).-............ ( -24.72)
>DroYak_CAF1 22934 94 - 1
--UGCGGCUGAAACAUGUUGCUUGCUCUGCUAAUCAAGCGGACUUUGUCGAGUACAUGGCUCUGUUAUUCUGCAAGCAGUGCAG-UUUAGUCGUCGU
--.(((((((((...((((((((((((((((.....)))))).......((((.....)))).........)))))))..))).-)))))))))... ( -33.40)
>DroAna_CAF1 20352 83 - 1
UGUUUGAUUGCAACAUGUUGCACGCCUUA-------GAAGAACCUUU-----AACAGAGGUCUGUUAA--GGCAAGCAGUAUACGUUUGAACGAUUG
.(((..(.(((((....))))).((((((-------(.(((.((((.-----....))))))).))))--))).............)..)))..... ( -24.50)
>consensus
__UGCGGCUGAAACAUGUUGCAUGCUCUGCUAACCAAGCGGACCUUGCCAAGUACAUAGCUCUGUUAUUCGGCAAGCAGUGCAC_UUGACACGACGG
...(((((........)))))....((((((.....))))))................((.(((((........))))).))............... (-14.48 = -14.82 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:21 2006