Locus 1918

Sequence ID 2R_DroMel_CAF1
Location 7,221,503 – 7,221,604
Length 101
Max. P 0.992987
window3173

overview

Window 3

Location 7,221,503 – 7,221,604
Length 101
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 88.16
Mean single sequence MFE -38.48
Consensus MFE -32.98
Energy contribution -32.14
Covariance contribution -0.84
Combinations/Pair 1.24
Mean z-score -2.31
Structure conservation index 0.86
SVM decision value 2.37
SVM RNA-class probability 0.992987
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7221503 101 + 20766785
UGGCUCCUGAACUUGGUUAACUUGGCUAACAGGCUGG-----GCCAGUUGCAGCAUGCAGUUGCACCUCAAGCUGAGUUGAUUAGUUUGCCAGGUGGGGGCGUUUU
..((((((..(((((((......((((((..((((.(-----((.((.((((((.....)))))).))...))).))))..)))))).)))))))))))))..... ( -39.40)
>DroSec_CAF1 17301 101 + 1
UGGCUCCUGAACUUGGUUAACUUGGCUAACAGGCUGG-----GCCAGUUGCUACACCCAGUUGCACCUCAAGCUGAGUUGAUUACUUUGCCAGGUGGGGGCGUUUU
..((((((..((((((((((((..(((....((((((-----(...((....)).)))))))........)))..)))))........)))))))))))))..... ( -36.10)
>DroEre_CAF1 15703 101 + 1
UGGCUCCUGAACUUGGUUAACUUGGCUAACAGGAUGG-----GCCAGUUGCUACAUGCGGUCGCACCUCAAGCUGAGUUGAUUAGUUUGCCAGGUGGGGGCGUUUU
..((((((..((((((((((((..(((...(((.(((-----(((.((........)))))).)))))..)))..)))))........)))))))))))))..... ( -37.90)
>DroYak_CAF1 18004 101 + 1
UGGCUCCUGAACUUGGUUAACUUGGCUAACAGGAUGG-----GCCAGUUGCCACAUGCAGUUGCACCUCAAGCUGAGUUGAUUAGUUUGCCAGGUGGGGGCGUUUU
..((((((..((((((((((((..(((...(((((((-----((.....))).)))((....)).)))..)))..)))))........)))))))))))))..... ( -37.80)
>DroAna_CAF1 16045 106 + 1
UGGCUCCUGAACUUGGCCACCUUGGUUAACUGGAUUGCUAUUGCCGGCUGCCACAUGCAGUUGCAUUUUCAACCGAGUUGAUUAGUUUGCCAGGUGGGGGCGGUAU
..((((((..(((((((....((((((((((((.(((..(.(((.((((((.....))))))))).)..))))).))))))))))...)))))))))))))..... ( -41.20)
>consensus
UGGCUCCUGAACUUGGUUAACUUGGCUAACAGGAUGG_____GCCAGUUGCCACAUGCAGUUGCACCUCAAGCUGAGUUGAUUAGUUUGCCAGGUGGGGGCGUUUU
..((((((..(((((((((((((((((...(((.(((......)))..(((.((.....)).))))))..))))))))))........)))))))))))))..... (-32.98 = -32.14 +  -0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:20 2006